Jatropha Genome Database

JcCB0190191.10
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCB0190191.10 + phase: 2 /partial
         (83 letters)

Database: TAIR9_pep 
           33,410 sequences; 13,434,913 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT4G09020.1 | Symbols: ATISA3, ISA3 | ISA3 (ISOAMYLASE 3); alpha...   179   4e-46
AT2G39930.1 | Symbols: ISA1, ATISA1 | ISA1 (ISOAMYLASE 1); alpha...   105   5e-24
AT1G03310.1 | Symbols: ATISA2, ISA2, DBE1, BE2 | isoamylase, put...    91   1e-19
AT1G03310.2 | Symbols: ATISA2, ISA2, DBE1, BE2 | isoamylase, put...    91   1e-19

>AT4G09020.1 | Symbols: ATISA3, ISA3 | ISA3 (ISOAMYLASE 3);
           alpha-amylase/ isoamylase | chr4:5784099-5788839 FORWARD
          Length = 764

 Score =  179 bits (453), Expect = 4e-46,   Method: Composition-based stats.
 Identities = 75/83 (90%), Positives = 79/83 (95%)

Query: 1   CNHPVVMELILDSLRHWVAEYHVDGFRFDLASILCRGTDGSPLDSPPVIRAIAKDPILSR 60
           CNHPVVMELILDSLRHWV EYHVDGFRFDLAS+LCR TDGSPL +PP+IRAIAKD +LSR
Sbjct: 400 CNHPVVMELILDSLRHWVTEYHVDGFRFDLASVLCRATDGSPLSAPPLIRAIAKDSVLSR 459

Query: 61  CKIIAEPWDCGGLYLVGKFPNWD 83
           CKIIAEPWDCGGLYLVGKFPNWD
Sbjct: 460 CKIIAEPWDCGGLYLVGKFPNWD 482


>AT2G39930.1 | Symbols: ISA1, ATISA1 | ISA1 (ISOAMYLASE 1);
           alpha-amylase/ isoamylase | chr2:16666078-16672183
           FORWARD
          Length = 783

 Score =  105 bits (263), Expect = 5e-24,   Method: Compositional matrix adjust.
 Identities = 53/101 (52%), Positives = 61/101 (60%), Gaps = 19/101 (18%)

Query: 1   CNHPVVMELILDSLRHWVAEYHVDGFRFDLASILCRG-------------------TDGS 41
           CNHPVV + ILD LR+WV E HVDGFRFDL SI+ R                    T G+
Sbjct: 382 CNHPVVRQFILDCLRYWVTEMHVDGFRFDLGSIMSRSSSLWDAANVYGADVEGDLLTTGT 441

Query: 42  PLDSPPVIRAIAKDPILSRCKIIAEPWDCGGLYLVGKFPNW 82
           P+  PPVI  I+ DPIL   K+IAE WD GGLY VG FP+W
Sbjct: 442 PISCPPVIDMISNDPILRGVKLIAEAWDAGGLYQVGMFPHW 482


>AT1G03310.1 | Symbols: ATISA2, ISA2, DBE1, BE2 | isoamylase,
           putative / starch debranching enzyme, putative |
           chr1:813975-816623 FORWARD
          Length = 882

 Score = 90.9 bits (224), Expect = 1e-19,   Method: Composition-based stats.
 Identities = 44/85 (51%), Positives = 59/85 (69%), Gaps = 5/85 (5%)

Query: 1   CNHPVVMELILDSLRHWVAEYHVDGFRFDLASILCRGTDGSPLDSPPVIRAIAKDPILSR 60
           CN+PVV +L+L+SLR+WV E+HVDGF F  AS L RG  G  L  PP++ AIA DP+L+ 
Sbjct: 502 CNYPVVQQLVLESLRYWVTEFHVDGFCFINASSLLRGVHGEQLSRPPLVEAIAFDPLLAE 561

Query: 61  CKIIAEPWDCGGLYLVGK---FPNW 82
            K+IA+ WD   L ++ K   FP+W
Sbjct: 562 TKLIADCWD--PLEMMPKEVRFPHW 584


>AT1G03310.2 | Symbols: ATISA2, ISA2, DBE1, BE2 | isoamylase,
           putative / starch debranching enzyme, putative |
           chr1:813975-816623 FORWARD
          Length = 882

 Score = 90.9 bits (224), Expect = 1e-19,   Method: Composition-based stats.
 Identities = 44/85 (51%), Positives = 59/85 (69%), Gaps = 5/85 (5%)

Query: 1   CNHPVVMELILDSLRHWVAEYHVDGFRFDLASILCRGTDGSPLDSPPVIRAIAKDPILSR 60
           CN+PVV +L+L+SLR+WV E+HVDGF F  AS L RG  G  L  PP++ AIA DP+L+ 
Sbjct: 502 CNYPVVQQLVLESLRYWVTEFHVDGFCFINASSLLRGVHGEQLSRPPLVEAIAFDPLLAE 561

Query: 61  CKIIAEPWDCGGLYLVGK---FPNW 82
            K+IA+ WD   L ++ K   FP+W
Sbjct: 562 TKLIADCWD--PLEMMPKEVRFPHW 584