Jatropha Genome Database

JcCB0189561.10
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCB0189561.10 + phase: 0 /partial
         (128 letters)

Database: TAIR9_pep 
           33,410 sequences; 13,434,913 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT4G35250.1 | Symbols:  | vestitone reductase-related | chr4:167...   223   2e-59

>AT4G35250.1 | Symbols:  | vestitone reductase-related |
           chr4:16771401-16773269 REVERSE
          Length = 395

 Score =  223 bits (568), Expect = 2e-59,   Method: Compositional matrix adjust.
 Identities = 105/116 (90%), Positives = 112/116 (96%)

Query: 1   GLIGQYAVPILEEKSVWGTDAPTRIAYMDTQDIARLTFIALRNESINGKLLTFAGPRAWT 60
           GLIGQYAVPILEEKSVWGTDAPTR+AYMDTQDIARLT IALRNE INGKLLTFAGPRAWT
Sbjct: 228 GLIGQYAVPILEEKSVWGTDAPTRVAYMDTQDIARLTLIALRNEKINGKLLTFAGPRAWT 287

Query: 61  TQEVITLCERLAGQDANVTTVPVSILRLTRQLTRIFEWTNDVADRLAFSEVITSHS 116
           TQEVITLCERLAGQDANVTTVPVS+LR+TRQLTR F+WTNDVADRLAFSEV++S +
Sbjct: 288 TQEVITLCERLAGQDANVTTVPVSVLRVTRQLTRFFQWTNDVADRLAFSEVLSSDT 343