Jatropha Genome Database

JcCB0188421.10
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCB0188421.10 + phase: 1 /TE/partial
         (783 letters)

Database: TAIR9_pep 
           33,410 sequences; 13,434,913 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT4G23160.1 | Symbols:  | protein kinase family protein | chr4:1...   120   3e-27

>AT4G23160.1 | Symbols:  | protein kinase family protein |
           chr4:12129485-12134086 FORWARD
          Length = 1262

 Score =  120 bits (301), Expect = 3e-27,   Method: Compositional matrix adjust.
 Identities = 64/160 (40%), Positives = 96/160 (60%), Gaps = 8/160 (5%)

Query: 368 FAVAVAXNWELFQMDVQNAFLHGDLNEEVYMKMPPGFVSQTS-----RKVCRLQKSPYGL 422
            A++   N+ L Q+D+ NAFL+GDL+EE+YMK+PPG+ ++         VC L+KS YGL
Sbjct: 180 LAISAIYNFTLHQLDISNAFLNGDLDEEIYMKLPPGYAARQGDSLPPNAVCYLKKSIYGL 239

Query: 423 RKAPLCWFAKLATSLKTYGFKQSYSGYSLFTFRNGHGQLNILVYVDDLIIFYKNSSAIQK 482
           ++A   WF K + +L  +GF QS+S ++ F        L +LVYVDD+II   N +A+ +
Sbjct: 240 KQASRQWFLKFSVTLIGFGFVQSHSDHTYFLKITATLFLCVLVYVDDIIICSNNDAAVDE 299

Query: 483 FMDYLNCSFHMKDFGKLKYFLGIGRQEILMVFSCVNANER 522
               L   F ++D G LKYFLG+   EI    + +N  +R
Sbjct: 300 LKSQLKSCFKLRDLGPLKYFLGL---EIARSAAGINICQR 336