Jatropha Genome Database

JcCB0187931.10
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCB0187931.10 - phase: 1 /partial
         (229 letters)

Database: TAIR9_pep 
           33,410 sequences; 13,434,913 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT1G47870.1 | Symbols: E2FC, ATE2F2, ATE2FC | ATE2F2; DNA bindin...   185   2e-47
AT2G36010.3 | Symbols: E2F3, ATE2FA | E2F3 (E2F TRANSCRIPTION FA...   163   1e-40
AT2G36010.1 | Symbols: E2F3, ATE2FA | E2F3 (E2F TRANSCRIPTION FA...   162   2e-40
AT5G22220.2 | Symbols: E2F1, E2FB, ATE2FB | E2F1; DNA binding / ...   159   2e-39
AT5G22220.3 | Symbols: E2F1, E2FB, ATE2FB | E2F1; DNA binding / ...   159   2e-39
AT2G36010.2 | Symbols: E2F3, ATE2FA | E2F3 (E2F TRANSCRIPTION FA...   134   5e-32

>AT1G47870.1 | Symbols: E2FC, ATE2F2, ATE2FC | ATE2F2; DNA binding /
           protein heterodimerization/ transcription factor |
           chr1:17634937-17637557 FORWARD
          Length = 396

 Score =  185 bits (469), Expect = 2e-47,   Method: Compositional matrix adjust.
 Identities = 99/204 (48%), Positives = 129/204 (63%), Gaps = 29/204 (14%)

Query: 26  RGCDGGGSKELDAHVNRLKAEVESLHAEEHRLDESIRQKQELLRSLEEDENNQRYLFMTE 85
           +G D  G K+L   ++RLK+EVES+ +EE RLD+ IR++QE LRSLEED+  +RY+FMTE
Sbjct: 219 KGADNLGQKDLGDQISRLKSEVESMQSEESRLDDLIRERQEALRSLEEDDYCRRYMFMTE 278

Query: 86  EDITSLPCFQNQTLIAIKAPQASYLEVPDPDEDIGCPQYKMIVRSNTGPIDLYLLSKYNQ 145
           EDITSLP FQNQTL+AIKAP ASY+EVPDPDE     QY+M++RS  GPID+YLLSKY  
Sbjct: 279 EDITSLPRFQNQTLLAIKAPTASYIEVPDPDEMSFPQQYRMVIRSRMGPIDVYLLSKYKG 338

Query: 146 QHEDVAVKQVNPLTSTSPKCCPHRMETEGLSFEQHYQNNNAEMFNSLYSESSGIQKIIPS 205
              + + K    L + S +  P  ++T  L                         KI+ S
Sbjct: 339 DSAETSDK----LGNESDQKAPVGVDTPSL-------------------------KIVTS 369

Query: 206 DCDIDDDYWFRSNPEVSTSELWGN 229
           D D+  DYWF S+ EVS ++LW N
Sbjct: 370 DTDLKADYWFESDAEVSLTDLWSN 393


>AT2G36010.3 | Symbols: E2F3, ATE2FA | E2F3 (E2F TRANSCRIPTION
           FACTOR 3); DNA binding / transcription factor |
           chr2:15119688-15122893 FORWARD
          Length = 485

 Score =  163 bits (412), Expect = 1e-40,   Method: Compositional matrix adjust.
 Identities = 96/222 (43%), Positives = 133/222 (59%), Gaps = 18/222 (8%)

Query: 24  ICRGCDG-GGSKELDAHVNRLKAEVESLHAEEHRLDESIRQKQELLRSLEEDENNQRYLF 82
           + +G D   G ++ D  V +L+AE+E+L  EE  LD  IRQ +E LR L E+E NQ++LF
Sbjct: 229 LWKGVDACPGDEDADVSVLQLQAEIENLALEEQALDNQIRQTEERLRDLSENEKNQKWLF 288

Query: 83  MTEEDITSLPCFQNQTLIAIKAPQASYLEVPDPDEDIGCPQ--YKMIVRSNTGPIDLYLL 140
           +TEEDI SLP FQNQTLIA+KAP  + LEVPDPDE    PQ  Y++I+RS  GPID+YL+
Sbjct: 289 VTEEDIKSLPGFQNQTLIAVKAPHGTTLEVPDPDEAADHPQRRYRIILRSTMGPIDVYLV 348

Query: 141 SKYNQQHED-----VAVKQVNPLTSTSPKCCPHRM--------ETEGLSFEQ-HYQNNNA 186
           S++  + ED      A     P+ S+S     H +        ET  +S +  H Q  + 
Sbjct: 349 SEFEGKFEDTNGSGAAPPACLPIASSSGSTGHHDIEALTVDNPETAIVSHDHPHPQPGDT 408

Query: 187 EMFNSLYSESSGIQKIIPSDCDIDD-DYWFRSNPEVSTSELW 227
              N L  +  G+ KI PSD + D+ DYW  SN E+S +++W
Sbjct: 409 SDLNYLQEQVGGMLKITPSDVENDESDYWLLSNAEISMTDIW 450


>AT2G36010.1 | Symbols: E2F3, ATE2FA | E2F3 (E2F TRANSCRIPTION
           FACTOR 3); DNA binding / transcription factor |
           chr2:15119688-15122893 FORWARD
          Length = 483

 Score =  162 bits (410), Expect = 2e-40,   Method: Compositional matrix adjust.
 Identities = 97/221 (43%), Positives = 132/221 (59%), Gaps = 18/221 (8%)

Query: 24  ICRGCDGGGSKELDAHVNRLKAEVESLHAEEHRLDESIRQKQELLRSLEEDENNQRYLFM 83
           + +G D     E DA V+ L+AE+E+L  EE  LD  IRQ +E LR L E+E NQ++LF+
Sbjct: 229 LWKGVDACPGDE-DADVSVLQAEIENLALEEQALDNQIRQTEERLRDLSENEKNQKWLFV 287

Query: 84  TEEDITSLPCFQNQTLIAIKAPQASYLEVPDPDEDIGCPQ--YKMIVRSNTGPIDLYLLS 141
           TEEDI SLP FQNQTLIA+KAP  + LEVPDPDE    PQ  Y++I+RS  GPID+YL+S
Sbjct: 288 TEEDIKSLPGFQNQTLIAVKAPHGTTLEVPDPDEAADHPQRRYRIILRSTMGPIDVYLVS 347

Query: 142 KYNQQHED-----VAVKQVNPLTSTSPKCCPHRM--------ETEGLSFEQ-HYQNNNAE 187
           ++  + ED      A     P+ S+S     H +        ET  +S +  H Q  +  
Sbjct: 348 EFEGKFEDTNGSGAAPPACLPIASSSGSTGHHDIEALTVDNPETAIVSHDHPHPQPGDTS 407

Query: 188 MFNSLYSESSGIQKIIPSDCDIDD-DYWFRSNPEVSTSELW 227
             N L  +  G+ KI PSD + D+ DYW  SN E+S +++W
Sbjct: 408 DLNYLQEQVGGMLKITPSDVENDESDYWLLSNAEISMTDIW 448


>AT5G22220.2 | Symbols: E2F1, E2FB, ATE2FB | E2F1; DNA binding /
           protein binding / transcription factor |
           chr5:7360749-7364120 FORWARD
          Length = 469

 Score =  159 bits (402), Expect = 2e-39,   Method: Compositional matrix adjust.
 Identities = 94/227 (41%), Positives = 130/227 (57%), Gaps = 25/227 (11%)

Query: 26  RGCDGGGSKELDAHVNRLKAEVESLHAEEHRLDESIRQKQELLRSLEEDENNQRYLFMTE 85
           +G D     E    +  L+ EV++L AEE RLD+ IR+ QE L SL EDENN+R LF+TE
Sbjct: 193 KGLDVSKPGETIESIANLQDEVQNLAAEEARLDDQIRESQERLTSLSEDENNKRLLFVTE 252

Query: 86  EDITSLPCFQNQTLIAIKAPQASYLEVPDPDEDIGCP-QYKMIVRSNTGPIDLYLLSKYN 144
            DI +LPCFQN+TLIA+KAP  + LEVPDPDE  G   +Y++I+RS  GPID+YL+S++ 
Sbjct: 253 NDIKNLPCFQNKTLIAVKAPHGTTLEVPDPDEAGGYQRRYRIILRSTMGPIDVYLVSQFE 312

Query: 145 QQHEDVA-----------------VKQVNPLTSTSPKCCPHRMETEGLSFEQHYQNNNAE 187
           +  ED+                  V    P TS  P+     M  +  S E++ +    +
Sbjct: 313 ESFEDIPQADEPSNVPDEPSNVPDVPSNLPSTSGLPENHDVSMPMKEESTERNMETQEVD 372

Query: 188 MFNSLYSE------SSGIQKIIPSDCDIDDDYWFRSN-PEVSTSELW 227
               +YS+        GI KI+P D D+  DYWFRS   EVS +++W
Sbjct: 373 DTQRVYSDIESHDFVDGIMKIVPPDLDMGVDYWFRSEVGEVSITDMW 419


>AT5G22220.3 | Symbols: E2F1, E2FB, ATE2FB | E2F1; DNA binding /
           protein binding / transcription factor |
           chr5:7360749-7364120 FORWARD
          Length = 466

 Score =  159 bits (401), Expect = 2e-39,   Method: Compositional matrix adjust.
 Identities = 94/227 (41%), Positives = 130/227 (57%), Gaps = 25/227 (11%)

Query: 26  RGCDGGGSKELDAHVNRLKAEVESLHAEEHRLDESIRQKQELLRSLEEDENNQRYLFMTE 85
           +G D     E    +  L+ EV++L AEE RLD+ IR+ QE L SL EDENN+R LF+TE
Sbjct: 193 KGLDVSKPGETIESIANLQDEVQNLAAEEARLDDQIRESQERLTSLSEDENNKRLLFVTE 252

Query: 86  EDITSLPCFQNQTLIAIKAPQASYLEVPDPDEDIGCP-QYKMIVRSNTGPIDLYLLSKYN 144
            DI +LPCFQN+TLIA+KAP  + LEVPDPDE  G   +Y++I+RS  GPID+YL+S++ 
Sbjct: 253 NDIKNLPCFQNKTLIAVKAPHGTTLEVPDPDEAGGYQRRYRIILRSTMGPIDVYLVSQFE 312

Query: 145 QQHEDVA-----------------VKQVNPLTSTSPKCCPHRMETEGLSFEQHYQNNNAE 187
           +  ED+                  V    P TS  P+     M  +  S E++ +    +
Sbjct: 313 ESFEDIPQADEPSNVPDEPSNVPDVPSNLPSTSGLPENHDVSMPMKEESTERNMETQEVD 372

Query: 188 MFNSLYSE------SSGIQKIIPSDCDIDDDYWFRSN-PEVSTSELW 227
               +YS+        GI KI+P D D+  DYWFRS   EVS +++W
Sbjct: 373 DTQRVYSDIESHDFVDGIMKIVPPDLDMGVDYWFRSEVGEVSITDMW 419


>AT2G36010.2 | Symbols: E2F3, ATE2FA | E2F3 (E2F TRANSCRIPTION
           FACTOR 3); DNA binding / transcription factor |
           chr2:15119688-15122893 FORWARD
          Length = 514

 Score =  134 bits (337), Expect = 5e-32,   Method: Compositional matrix adjust.
 Identities = 87/222 (39%), Positives = 121/222 (54%), Gaps = 35/222 (15%)

Query: 24  ICRGCDG-GGSKELDAHVNRLKAEVESLHAEEHRLDESIRQKQELLRSLEEDENNQRYLF 82
           + +G D   G ++ D  V +L+AE+E+L  EE  LD  IR                 +LF
Sbjct: 275 LWKGVDACPGDEDADVSVLQLQAEIENLALEEQALDNQIR-----------------WLF 317

Query: 83  MTEEDITSLPCFQNQTLIAIKAPQASYLEVPDPDEDIGCPQ--YKMIVRSNTGPIDLYLL 140
           +TEEDI SLP FQNQTLIA+KAP  + LEVPDPDE    PQ  Y++I+RS  GPID+YL+
Sbjct: 318 VTEEDIKSLPGFQNQTLIAVKAPHGTTLEVPDPDEAADHPQRRYRIILRSTMGPIDVYLV 377

Query: 141 SKYNQQHED-----VAVKQVNPLTSTSPKCCPHRM--------ETEGLSFEQ-HYQNNNA 186
           S++  + ED      A     P+ S+S     H +        ET  +S +  H Q  + 
Sbjct: 378 SEFEGKFEDTNGSGAAPPACLPIASSSGSTGHHDIEALTVDNPETAIVSHDHPHPQPGDT 437

Query: 187 EMFNSLYSESSGIQKIIPSDCDIDD-DYWFRSNPEVSTSELW 227
              N L  +  G+ KI PSD + D+ DYW  SN E+S +++W
Sbjct: 438 SDLNYLQEQVGGMLKITPSDVENDESDYWLLSNAEISMTDIW 479