Jatropha Genome Database

JcCB0187481.10
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCB0187481.10 + phase: 0 /partial
         (147 letters)

Database: TAIR9_pep 
           33,410 sequences; 13,434,913 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT2G21870.2 | Symbols:  | unknown protein | chr2:9320612-9322618...   175   1e-44
AT2G21870.1 | Symbols:  | unknown protein | chr2:9320456-9322618...   175   1e-44

>AT2G21870.2 | Symbols:  | unknown protein | chr2:9320612-9322618
           REVERSE
          Length = 220

 Score =  175 bits (443), Expect = 1e-44,   Method: Compositional matrix adjust.
 Identities = 87/141 (61%), Positives = 107/141 (75%), Gaps = 8/141 (5%)

Query: 1   MAFPSRLLSRSKQLYGSQVILQQDHAIPVRYFAKKADPPSQKGDSPPRLKGDELLKGIFL 60
           MA+ SR LSRSKQL G  VILQQ HAIPVR FAK+A        + P  KGDE+LKG+F 
Sbjct: 1   MAYASRFLSRSKQLQGGLVILQQQHAIPVRAFAKEA--------ARPTFKGDEMLKGVFF 52

Query: 61  EVKKKYETAVGILKKEKITIAPEDPSAVSQYAKIMKTIREKAGLFSESERIKFTIETQTV 120
           ++K K++ AV IL+KEKIT+ PEDP+AV QYA +MKTIR+KA +FSES+RIK  I+T+T 
Sbjct: 53  DIKNKFQAAVDILRKEKITLDPEDPAAVKQYANVMKTIRQKADMFSESQRIKHDIDTETQ 112

Query: 121 DIPDARTYLLTLKEIRIKYVL 141
           DIPDAR YLL L+EIR +  L
Sbjct: 113 DIPDARAYLLKLQEIRTRRGL 133


>AT2G21870.1 | Symbols:  | unknown protein | chr2:9320456-9322618
           REVERSE
          Length = 240

 Score =  175 bits (443), Expect = 1e-44,   Method: Compositional matrix adjust.
 Identities = 87/141 (61%), Positives = 107/141 (75%), Gaps = 8/141 (5%)

Query: 1   MAFPSRLLSRSKQLYGSQVILQQDHAIPVRYFAKKADPPSQKGDSPPRLKGDELLKGIFL 60
           MA+ SR LSRSKQL G  VILQQ HAIPVR FAK+A        + P  KGDE+LKG+F 
Sbjct: 1   MAYASRFLSRSKQLQGGLVILQQQHAIPVRAFAKEA--------ARPTFKGDEMLKGVFF 52

Query: 61  EVKKKYETAVGILKKEKITIAPEDPSAVSQYAKIMKTIREKAGLFSESERIKFTIETQTV 120
           ++K K++ AV IL+KEKIT+ PEDP+AV QYA +MKTIR+KA +FSES+RIK  I+T+T 
Sbjct: 53  DIKNKFQAAVDILRKEKITLDPEDPAAVKQYANVMKTIRQKADMFSESQRIKHDIDTETQ 112

Query: 121 DIPDARTYLLTLKEIRIKYVL 141
           DIPDAR YLL L+EIR +  L
Sbjct: 113 DIPDARAYLLKLQEIRTRRGL 133