Jatropha Genome Database
- JcCB0186801.10
BLASTP 2.2.23 [Feb-03-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= JcCB0186801.10 + phase: 2 /pseudo/partial
(348 letters)
Database: TAIR9_pep
33,410 sequences; 13,434,913 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AT4G28910.3 | Symbols: | LOCATED IN: cellular_component unknown... 181 7e-46
AT4G28910.1 | Symbols: | LOCATED IN: cellular_component unknown... 181 7e-46
AT4G28910.2 | Symbols: | LOCATED IN: cellular_component unknown... 181 7e-46
>AT4G28910.3 | Symbols: | LOCATED IN: cellular_component unknown;
EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13
growth stages; CONTAINS InterPro DOMAIN/s: Protein of
unknown function DUF1675 (InterPro:IPR012463); BEST
Arabidopsis thaliana protein match is: nuclear transport
factor 2 (NTF2) family protein / RNA recognition motif
(RRM)-containing protein (TAIR:AT3G07250.1); Has 223
Blast hits to 204 proteins in 56 species: Archae - 2;
Bacteria - 11; Metazoa - 48; Fungi - 32; Plants - 89;
Viruses - 3; Other Eukaryotes - 38 (source: NCBI BLink).
| chr4:14264330-14265680 REVERSE
Length = 425
Score = 181 bits (459), Expect = 7e-46, Method: Compositional matrix adjust.
Identities = 131/303 (43%), Positives = 171/303 (56%), Gaps = 71/303 (23%)
Query: 48 KNLLHASSQK-QDSSLGSQISDS-VKPQENFFNDLSKA-NIDADASVNLKNRGLWVSGSN 104
KN LH +SQ+ + S GSQ SDS +P +NFFNDLSKA +A+AS + LWV
Sbjct: 53 KNFLHPTSQRPAEPSSGSQRSDSGQQPPQNFFNDLSKAPTTEAEAST----KPLWV---- 104
Query: 105 RPAEIEEEKRPEAGNKRKMLFDDINNQKKQERDAHHSDVHDK--KASHISITTEDGSTAE 162
E+E R EAGNKRK F +N+ KK+E+D+ H D+H+K KASH+S T++GSTAE
Sbjct: 105 -----EDESRKEAGNKRKFGFPGMNDDKKKEKDSSHVDMHEKKTKASHVSTATDEGSTAE 159
Query: 163 NEDVAESEVEGSTSRLLSHHDVGSKRFIGVGAPSEVPKEVRGFSDSGVID-LQGQKRPN- 220
NEDVAESEV G +S S+H + VR +D+ ++D L GQ+R N
Sbjct: 160 NEDVAESEVGGGSS---SNH---------------AKEVVRPPTDTNIVDNLTGQRRSNH 201
Query: 221 -GSSETEIKHGNLNYGVPFSVRPVNIM-NFPYSFPIKESNCIGIPNTSGPPLSGMMQVVP 278
GS E N++Y VPF+V P N++ + PYS P KES
Sbjct: 202 GGSGTEEFTMRNMSYTVPFTVHPQNVVTSMPYSLPTKES--------------------- 240
Query: 279 TSNGEHQTGTQ----SASPGNLPVTFGYSPVQLPTLDKDNSWSLVSHLQQFHPSYAGRGP 334
G+H T +A+ GNLP+ FGYSPVQLP LDKD S +V+ Q +AGR P
Sbjct: 241 ---GQHAAATSLLQPNANAGNLPIMFGYSPVQLPMLDKDGSGGIVALSQS---PFAGRVP 294
Query: 335 SNS 337
SNS
Sbjct: 295 SNS 297
>AT4G28910.1 | Symbols: | LOCATED IN: cellular_component unknown;
EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13
growth stages; CONTAINS InterPro DOMAIN/s: Protein of
unknown function DUF1675 (InterPro:IPR012463); BEST
Arabidopsis thaliana protein match is: nuclear transport
factor 2 (NTF2) family protein / RNA recognition motif
(RRM)-containing protein (TAIR:AT3G07250.1); Has 223
Blast hits to 204 proteins in 56 species: Archae - 2;
Bacteria - 11; Metazoa - 48; Fungi - 32; Plants - 89;
Viruses - 3; Other Eukaryotes - 38 (source: NCBI BLink).
| chr4:14264330-14265680 REVERSE
Length = 425
Score = 181 bits (459), Expect = 7e-46, Method: Compositional matrix adjust.
Identities = 131/303 (43%), Positives = 171/303 (56%), Gaps = 71/303 (23%)
Query: 48 KNLLHASSQK-QDSSLGSQISDS-VKPQENFFNDLSKA-NIDADASVNLKNRGLWVSGSN 104
KN LH +SQ+ + S GSQ SDS +P +NFFNDLSKA +A+AS + LWV
Sbjct: 53 KNFLHPTSQRPAEPSSGSQRSDSGQQPPQNFFNDLSKAPTTEAEAST----KPLWV---- 104
Query: 105 RPAEIEEEKRPEAGNKRKMLFDDINNQKKQERDAHHSDVHDK--KASHISITTEDGSTAE 162
E+E R EAGNKRK F +N+ KK+E+D+ H D+H+K KASH+S T++GSTAE
Sbjct: 105 -----EDESRKEAGNKRKFGFPGMNDDKKKEKDSSHVDMHEKKTKASHVSTATDEGSTAE 159
Query: 163 NEDVAESEVEGSTSRLLSHHDVGSKRFIGVGAPSEVPKEVRGFSDSGVID-LQGQKRPN- 220
NEDVAESEV G +S S+H + VR +D+ ++D L GQ+R N
Sbjct: 160 NEDVAESEVGGGSS---SNH---------------AKEVVRPPTDTNIVDNLTGQRRSNH 201
Query: 221 -GSSETEIKHGNLNYGVPFSVRPVNIM-NFPYSFPIKESNCIGIPNTSGPPLSGMMQVVP 278
GS E N++Y VPF+V P N++ + PYS P KES
Sbjct: 202 GGSGTEEFTMRNMSYTVPFTVHPQNVVTSMPYSLPTKES--------------------- 240
Query: 279 TSNGEHQTGTQ----SASPGNLPVTFGYSPVQLPTLDKDNSWSLVSHLQQFHPSYAGRGP 334
G+H T +A+ GNLP+ FGYSPVQLP LDKD S +V+ Q +AGR P
Sbjct: 241 ---GQHAAATSLLQPNANAGNLPIMFGYSPVQLPMLDKDGSGGIVALSQS---PFAGRVP 294
Query: 335 SNS 337
SNS
Sbjct: 295 SNS 297
>AT4G28910.2 | Symbols: | LOCATED IN: cellular_component unknown;
EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13
growth stages; CONTAINS InterPro DOMAIN/s: Protein of
unknown function DUF1675 (InterPro:IPR012463); BEST
Arabidopsis thaliana protein match is: nuclear transport
factor 2 (NTF2) family protein / RNA recognition motif
(RRM)-containing protein (TAIR:AT3G07250.1); Has 223
Blast hits to 204 proteins in 56 species: Archae - 2;
Bacteria - 11; Metazoa - 48; Fungi - 32; Plants - 89;
Viruses - 3; Other Eukaryotes - 38 (source: NCBI BLink).
| chr4:14264330-14265680 REVERSE
Length = 425
Score = 181 bits (459), Expect = 7e-46, Method: Compositional matrix adjust.
Identities = 131/303 (43%), Positives = 171/303 (56%), Gaps = 71/303 (23%)
Query: 48 KNLLHASSQK-QDSSLGSQISDS-VKPQENFFNDLSKA-NIDADASVNLKNRGLWVSGSN 104
KN LH +SQ+ + S GSQ SDS +P +NFFNDLSKA +A+AS + LWV
Sbjct: 53 KNFLHPTSQRPAEPSSGSQRSDSGQQPPQNFFNDLSKAPTTEAEAST----KPLWV---- 104
Query: 105 RPAEIEEEKRPEAGNKRKMLFDDINNQKKQERDAHHSDVHDK--KASHISITTEDGSTAE 162
E+E R EAGNKRK F +N+ KK+E+D+ H D+H+K KASH+S T++GSTAE
Sbjct: 105 -----EDESRKEAGNKRKFGFPGMNDDKKKEKDSSHVDMHEKKTKASHVSTATDEGSTAE 159
Query: 163 NEDVAESEVEGSTSRLLSHHDVGSKRFIGVGAPSEVPKEVRGFSDSGVID-LQGQKRPN- 220
NEDVAESEV G +S S+H + VR +D+ ++D L GQ+R N
Sbjct: 160 NEDVAESEVGGGSS---SNH---------------AKEVVRPPTDTNIVDNLTGQRRSNH 201
Query: 221 -GSSETEIKHGNLNYGVPFSVRPVNIM-NFPYSFPIKESNCIGIPNTSGPPLSGMMQVVP 278
GS E N++Y VPF+V P N++ + PYS P KES
Sbjct: 202 GGSGTEEFTMRNMSYTVPFTVHPQNVVTSMPYSLPTKES--------------------- 240
Query: 279 TSNGEHQTGTQ----SASPGNLPVTFGYSPVQLPTLDKDNSWSLVSHLQQFHPSYAGRGP 334
G+H T +A+ GNLP+ FGYSPVQLP LDKD S +V+ Q +AGR P
Sbjct: 241 ---GQHAAATSLLQPNANAGNLPIMFGYSPVQLPMLDKDGSGGIVALSQS---PFAGRVP 294
Query: 335 SNS 337
SNS
Sbjct: 295 SNS 297