Jatropha Genome Database
- JcCB0186651.10
BLASTP 2.2.23 [Feb-03-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= JcCB0186651.10 - phase: 0
(353 letters)
Database: TAIR9_pep
33,410 sequences; 13,434,913 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AT1G67260.2 | Symbols: TCP1 | TCP1; DNA binding / transcription ... 112 4e-25
AT1G67260.1 | Symbols: TCP1 | TCP1; DNA binding / transcription ... 112 4e-25
AT1G68800.1 | Symbols: BRC2, TCP12 | TCP12 (TCP DOMAIN PROTEIN 1... 101 6e-22
AT3G18550.1 | Symbols: BRC1, TCP18, ATTCP18 | BRC1 (BRANCHED 1);... 93 2e-19
AT3G18550.2 | Symbols: BRC1, TCP18, ATTCP18 | BRC1 (BRANCHED 1);... 93 2e-19
AT4G18390.2 | Symbols: | TCP family transcription factor, putat... 80 2e-15
AT4G18390.1 | Symbols: | TCP family transcription factor, putat... 80 2e-15
AT2G31070.1 | Symbols: TCP10 | TCP10 (TCP DOMAIN PROTEIN 10); tr... 78 7e-15
AT1G53230.1 | Symbols: TCP3 | TCP3; transcription factor | chr1:... 78 8e-15
AT3G15030.2 | Symbols: TCP4 | TCP4 (TCP family transcription fac... 77 2e-14
AT3G15030.1 | Symbols: TCP4, MEE35 | TCP4 (TCP family transcript... 77 2e-14
AT1G30210.2 | Symbols: TCP24 | TCP24 (TEOSINTE BRANCHED1, CYCLOI... 76 3e-14
AT1G30210.1 | Symbols: TCP24, ATTCP24 | TCP24 (TEOSINTE BRANCHED... 76 3e-14
AT3G02150.1 | Symbols: PTF1, TCP13, TFPD | PTF1 (PLASTID TRANSCR... 69 4e-12
AT3G02150.2 | Symbols: PTF1, TFPD | PTF1 (PLASTID TRANSCRIPTION ... 69 4e-12
AT5G60970.1 | Symbols: TCP5 | TCP5 (TEOSINTE BRANCHED1, CYCLOIDE... 68 1e-11
AT5G08070.1 | Symbols: TCP17 | TCP17 (TCP DOMAIN PROTEIN 17); tr... 64 2e-10
>AT1G67260.2 | Symbols: TCP1 | TCP1; DNA binding / transcription
factor | chr1:25168152-25169307 REVERSE
Length = 351
Score = 112 bits (280), Expect = 4e-25, Method: Compositional matrix adjust.
Identities = 69/157 (43%), Positives = 84/157 (53%), Gaps = 25/157 (15%)
Query: 107 KKPLKKDRHSKIHTSQGLRDRRVRLSIQIARKFFDLQDMLGFDKASKTLEWLLSKSKRAI 166
KK +KKDRHSKI T+QG+RDRRVRLSI IAR+FFDLQDMLGFDKASKTL+WLL KS++AI
Sbjct: 83 KKVVKKDRHSKIQTAQGIRDRRVRLSIGIARQFFDLQDMLGFDKASKTLDWLLKKSRKAI 142
Query: 167 KRVAHKR--------------------XXXXXXXXXXXTCEALSPENGEIAMEEGIVSTG 206
K V + LSP G EE +V
Sbjct: 143 KEVVQAKNLNNDDEDFGNIGGDVEQEEEKEEDDNGDKSFVYGLSPGYG----EEEVVCEA 198
Query: 207 XXXXXXXXXXXYTTNLAAKELRVKARARARERTRIKM 243
N+++K L KAR +A+ERT+ M
Sbjct: 199 TKAGIRKKKSE-LRNISSKGLGAKARGKAKERTKEMM 234
>AT1G67260.1 | Symbols: TCP1 | TCP1; DNA binding / transcription
factor | chr1:25168228-25169307 REVERSE
Length = 359
Score = 112 bits (280), Expect = 4e-25, Method: Compositional matrix adjust.
Identities = 69/157 (43%), Positives = 84/157 (53%), Gaps = 25/157 (15%)
Query: 107 KKPLKKDRHSKIHTSQGLRDRRVRLSIQIARKFFDLQDMLGFDKASKTLEWLLSKSKRAI 166
KK +KKDRHSKI T+QG+RDRRVRLSI IAR+FFDLQDMLGFDKASKTL+WLL KS++AI
Sbjct: 83 KKVVKKDRHSKIQTAQGIRDRRVRLSIGIARQFFDLQDMLGFDKASKTLDWLLKKSRKAI 142
Query: 167 KRVAHKRXXXXXXXXXXXT--------------------CEALSPENGEIAMEEGIVSTG 206
K V + LSP G EE +V
Sbjct: 143 KEVVQAKNLNNDDEDFGNIGGDVEQEEEKEEDDNGDKSFVYGLSPGYG----EEEVVCEA 198
Query: 207 XXXXXXXXXXXYTTNLAAKELRVKARARARERTRIKM 243
N+++K L KAR +A+ERT+ M
Sbjct: 199 TKAGIRKKKSE-LRNISSKGLGAKARGKAKERTKEMM 234
>AT1G68800.1 | Symbols: BRC2, TCP12 | TCP12 (TCP DOMAIN PROTEIN 12);
transcription factor | chr1:25847306-25848471 REVERSE
Length = 356
Score = 101 bits (252), Expect = 6e-22, Method: Compositional matrix adjust.
Identities = 47/62 (75%), Positives = 56/62 (90%)
Query: 111 KKDRHSKIHTSQGLRDRRVRLSIQIARKFFDLQDMLGFDKASKTLEWLLSKSKRAIKRVA 170
K+DRHSKI T+QG RDRR+RLS+QIARKFFDLQDMLGFDKASKT+EWL SKSK +IK++
Sbjct: 112 KRDRHSKICTAQGPRDRRMRLSLQIARKFFDLQDMLGFDKASKTIEWLFSKSKTSIKQLK 171
Query: 171 HK 172
+
Sbjct: 172 ER 173
>AT3G18550.1 | Symbols: BRC1, TCP18, ATTCP18 | BRC1 (BRANCHED 1);
transcription factor | chr3:6383769-6385604 FORWARD
Length = 433
Score = 93.2 bits (230), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 41/65 (63%), Positives = 55/65 (84%)
Query: 106 AKKPLKKDRHSKIHTSQGLRDRRVRLSIQIARKFFDLQDMLGFDKASKTLEWLLSKSKRA 165
AKKP + DRHSKI T++G RDRR+RLS+ +A++ F LQDMLGFDKASKT+EWLL+++K
Sbjct: 143 AKKPSRTDRHSKIKTAKGTRDRRMRLSLDVAKELFGLQDMLGFDKASKTVEWLLTQAKPE 202
Query: 166 IKRVA 170
I ++A
Sbjct: 203 IIKIA 207
>AT3G18550.2 | Symbols: BRC1, TCP18, ATTCP18 | BRC1 (BRANCHED 1);
transcription factor | chr3:6383769-6385604 FORWARD
Length = 429
Score = 93.2 bits (230), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 41/65 (63%), Positives = 55/65 (84%)
Query: 106 AKKPLKKDRHSKIHTSQGLRDRRVRLSIQIARKFFDLQDMLGFDKASKTLEWLLSKSKRA 165
AKKP + DRHSKI T++G RDRR+RLS+ +A++ F LQDMLGFDKASKT+EWLL+++K
Sbjct: 143 AKKPSRTDRHSKIKTAKGTRDRRMRLSLDVAKELFGLQDMLGFDKASKTVEWLLTQAKPE 202
Query: 166 IKRVA 170
I ++A
Sbjct: 203 IIKIA 207
>AT4G18390.2 | Symbols: | TCP family transcription factor, putative
| chr4:10163212-10164309 REVERSE
Length = 365
Score = 80.1 bits (196), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 46/128 (35%), Positives = 65/128 (50%), Gaps = 5/128 (3%)
Query: 112 KDRHSKIHTSQGLRDRRVRLSIQIARKFFDLQDMLGFDKASKTLEWLLSKSKRAIKRVAH 171
KDRHSK+ TS+G RDRRVRLS+ A +F+DLQD LG+D+ SK +EWL+ ++ +I +
Sbjct: 43 KDRHSKVLTSKGPRDRRVRLSVSTALQFYDLQDRLGYDQPSKAVEWLIKAAEDSISELPS 102
Query: 172 KRXXXXXXXXXXXTCEALSPENGEIAMEEGIVSTGXXXXXXXXXXXYTTNLAAKELRVKA 231
+ L+ + + +L+ ELR KA
Sbjct: 103 LNNTHFPTDDENHQNQTLT-----TVAANSLSKSACSSNSDTSKNSSGLSLSRSELRDKA 157
Query: 232 RARARERT 239
R RARERT
Sbjct: 158 RERARERT 165
>AT4G18390.1 | Symbols: | TCP family transcription factor, putative
| chr4:10163212-10164309 REVERSE
Length = 365
Score = 80.1 bits (196), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 46/128 (35%), Positives = 65/128 (50%), Gaps = 5/128 (3%)
Query: 112 KDRHSKIHTSQGLRDRRVRLSIQIARKFFDLQDMLGFDKASKTLEWLLSKSKRAIKRVAH 171
KDRHSK+ TS+G RDRRVRLS+ A +F+DLQD LG+D+ SK +EWL+ ++ +I +
Sbjct: 43 KDRHSKVLTSKGPRDRRVRLSVSTALQFYDLQDRLGYDQPSKAVEWLIKAAEDSISELPS 102
Query: 172 KRXXXXXXXXXXXTCEALSPENGEIAMEEGIVSTGXXXXXXXXXXXYTTNLAAKELRVKA 231
+ L+ + + +L+ ELR KA
Sbjct: 103 LNNTHFPTDDENHQNQTLT-----TVAANSLSKSACSSNSDTSKNSSGLSLSRSELRDKA 157
Query: 232 RARARERT 239
R RARERT
Sbjct: 158 RERARERT 165
>AT2G31070.1 | Symbols: TCP10 | TCP10 (TCP DOMAIN PROTEIN 10);
transcription factor | chr2:13220984-13222069 REVERSE
Length = 361
Score = 78.2 bits (191), Expect = 7e-15, Method: Compositional matrix adjust.
Identities = 33/59 (55%), Positives = 47/59 (79%)
Query: 111 KKDRHSKIHTSQGLRDRRVRLSIQIARKFFDLQDMLGFDKASKTLEWLLSKSKRAIKRV 169
+KDRHSK+ TS+G RDRRVRLS A +F+D+QD LG+D+ SK ++WL+ K+K AI ++
Sbjct: 29 RKDRHSKVFTSKGPRDRRVRLSAHTAIQFYDVQDRLGYDRPSKAVDWLIKKAKTAIDKL 87
>AT1G53230.1 | Symbols: TCP3 | TCP3; transcription factor |
chr1:19850260-19851435 REVERSE
Length = 391
Score = 78.2 bits (191), Expect = 8e-15, Method: Compositional matrix adjust.
Identities = 34/60 (56%), Positives = 48/60 (80%)
Query: 111 KKDRHSKIHTSQGLRDRRVRLSIQIARKFFDLQDMLGFDKASKTLEWLLSKSKRAIKRVA 170
+KDRHSK+ T++G RDRRVRLS A +F+D+QD LGFD+ SK ++WL++K+K AI +A
Sbjct: 49 RKDRHSKVCTAKGPRDRRVRLSAPTAIQFYDVQDRLGFDRPSKAVDWLITKAKSAIDDLA 108
>AT3G15030.2 | Symbols: TCP4 | TCP4 (TCP family transcription factor
4); transcription factor | chr3:5062308-5063570 FORWARD
Length = 420
Score = 77.0 bits (188), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 33/60 (55%), Positives = 47/60 (78%)
Query: 111 KKDRHSKIHTSQGLRDRRVRLSIQIARKFFDLQDMLGFDKASKTLEWLLSKSKRAIKRVA 170
+KDRHSK+ T++G RDRRVRLS A +F+D+QD LGFD+ SK ++WL+ K+K +I +A
Sbjct: 45 RKDRHSKVCTAKGPRDRRVRLSAHTAIQFYDVQDRLGFDRPSKAVDWLIKKAKTSIDELA 104
>AT3G15030.1 | Symbols: TCP4, MEE35 | TCP4 (TCP family transcription
factor 4); transcription factor | chr3:5062308-5063570
FORWARD
Length = 420
Score = 77.0 bits (188), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 33/60 (55%), Positives = 47/60 (78%)
Query: 111 KKDRHSKIHTSQGLRDRRVRLSIQIARKFFDLQDMLGFDKASKTLEWLLSKSKRAIKRVA 170
+KDRHSK+ T++G RDRRVRLS A +F+D+QD LGFD+ SK ++WL+ K+K +I +A
Sbjct: 45 RKDRHSKVCTAKGPRDRRVRLSAHTAIQFYDVQDRLGFDRPSKAVDWLIKKAKTSIDELA 104
>AT1G30210.2 | Symbols: TCP24 | TCP24 (TEOSINTE BRANCHED1,
CYCLOIDEA, AND PCF FAMILY 24); transcription factor |
chr1:10628754-10629728 REVERSE
Length = 324
Score = 76.3 bits (186), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 33/55 (60%), Positives = 45/55 (81%)
Query: 112 KDRHSKIHTSQGLRDRRVRLSIQIARKFFDLQDMLGFDKASKTLEWLLSKSKRAI 166
KDRHSK+ TS+GLRDRR+RLS+ A +F+DLQD LGFD+ SK +EWL++ + +I
Sbjct: 51 KDRHSKVLTSKGLRDRRIRLSVATAIQFYDLQDRLGFDQPSKAVEWLINAASDSI 105
>AT1G30210.1 | Symbols: TCP24, ATTCP24 | TCP24 (TEOSINTE BRANCHED1,
CYCLOIDEA, AND PCF FAMILY 24); transcription factor |
chr1:10628754-10629728 REVERSE
Length = 324
Score = 76.3 bits (186), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 33/55 (60%), Positives = 45/55 (81%)
Query: 112 KDRHSKIHTSQGLRDRRVRLSIQIARKFFDLQDMLGFDKASKTLEWLLSKSKRAI 166
KDRHSK+ TS+GLRDRR+RLS+ A +F+DLQD LGFD+ SK +EWL++ + +I
Sbjct: 51 KDRHSKVLTSKGLRDRRIRLSVATAIQFYDLQDRLGFDQPSKAVEWLINAASDSI 105
>AT3G02150.1 | Symbols: PTF1, TCP13, TFPD | PTF1 (PLASTID
TRANSCRIPTION FACTOR 1); transcription factor |
chr3:391522-392450 FORWARD
Length = 278
Score = 68.9 bits (167), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 31/59 (52%), Positives = 42/59 (71%)
Query: 112 KDRHSKIHTSQGLRDRRVRLSIQIARKFFDLQDMLGFDKASKTLEWLLSKSKRAIKRVA 170
KDRHSK+ T +GLRDRRVRLS+ A + +DLQ+ LG D+ SK ++WLL +K I +
Sbjct: 75 KDRHSKVCTLRGLRDRRVRLSVPTAIQLYDLQERLGVDQPSKAVDWLLDAAKEEIDELP 133
>AT3G02150.2 | Symbols: PTF1, TFPD | PTF1 (PLASTID TRANSCRIPTION
FACTOR 1); transcription factor | chr3:391522-392589
FORWARD
Length = 355
Score = 68.9 bits (167), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 31/59 (52%), Positives = 42/59 (71%)
Query: 112 KDRHSKIHTSQGLRDRRVRLSIQIARKFFDLQDMLGFDKASKTLEWLLSKSKRAIKRVA 170
KDRHSK+ T +GLRDRRVRLS+ A + +DLQ+ LG D+ SK ++WLL +K I +
Sbjct: 75 KDRHSKVCTLRGLRDRRVRLSVPTAIQLYDLQERLGVDQPSKAVDWLLDAAKEEIDELP 133
>AT5G60970.1 | Symbols: TCP5 | TCP5 (TEOSINTE BRANCHED1, CYCLOIDEA
AND PCF TRANSCRIPTION FACTOR 5); transcription factor |
chr5:24535570-24536652 REVERSE
Length = 360
Score = 67.8 bits (164), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 29/59 (49%), Positives = 42/59 (71%)
Query: 112 KDRHSKIHTSQGLRDRRVRLSIQIARKFFDLQDMLGFDKASKTLEWLLSKSKRAIKRVA 170
KDRHSK+ T +GLRDRR+RLS+ A + +DLQD LG + SK ++WLL +K + ++
Sbjct: 64 KDRHSKVCTVRGLRDRRIRLSVPTAIQLYDLQDRLGLSQPSKVIDWLLEAAKDDVDKLP 122
>AT5G08070.1 | Symbols: TCP17 | TCP17 (TCP DOMAIN PROTEIN 17);
transcription factor | chr5:2584885-2585613 FORWARD
Length = 242
Score = 63.5 bits (153), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 28/55 (50%), Positives = 40/55 (72%)
Query: 112 KDRHSKIHTSQGLRDRRVRLSIQIARKFFDLQDMLGFDKASKTLEWLLSKSKRAI 166
KDRHSK+ T +GLRDRR+RLS+ A + +DLQ+ LG + SK ++WLL +K +
Sbjct: 34 KDRHSKVCTVRGLRDRRIRLSVMTAIQVYDLQERLGLSQPSKVIDWLLEVAKNDV 88