Jatropha Genome Database

JcCB0186601.10
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCB0186601.10 - phase: 0 
         (63 letters)

Database: TAIR9_pep 
           33,410 sequences; 13,434,913 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT1G75720.1 | Symbols:  | unknown protein | chr1:28434648-284353...    57   2e-09
AT2G17940.1 | Symbols:  | unknown protein | chr2:7802878-7803815...    55   9e-09
AT3G51220.1 | Symbols:  | unknown protein | chr3:19021943-190226...    49   4e-07

>AT1G75720.1 | Symbols:  | unknown protein |
          chr1:28434648-28435318 REVERSE
          Length = 197

 Score = 57.4 bits (137), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 26/36 (72%), Positives = 31/36 (86%)

Query: 11 KRAEIDTRPPFRSVKEAVTLFGEKVLAGELYANKLK 46
          KRAEIDT  PFR+VKEAV LFGE+VLA ++Y+N LK
Sbjct: 5  KRAEIDTTAPFRTVKEAVALFGERVLASQVYSNHLK 40


>AT2G17940.1 | Symbols:  | unknown protein | chr2:7802878-7803815
          FORWARD
          Length = 208

 Score = 55.1 bits (131), Expect = 9e-09,   Method: Compositional matrix adjust.
 Identities = 25/37 (67%), Positives = 32/37 (86%)

Query: 12 RAEIDTRPPFRSVKEAVTLFGEKVLAGELYANKLKEV 48
          RAEI+T+  F SVKEAV +FGEKVLAGE+YA +L+E+
Sbjct: 11 RAEIETKAAFGSVKEAVAMFGEKVLAGEIYATRLREI 47


>AT3G51220.1 | Symbols:  | unknown protein |
          chr3:19021943-19022612 REVERSE
          Length = 186

 Score = 49.3 bits (116), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 23/33 (69%), Positives = 28/33 (84%)

Query: 12 RAEIDTRPPFRSVKEAVTLFGEKVLAGELYANK 44
          RAEI+T  PFRSVKEAVTLFGE++L G+ Y +K
Sbjct: 3  RAEIETGAPFRSVKEAVTLFGERILLGDNYISK 35