Jatropha Genome Database

JcCB0186451.10
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCB0186451.10 - phase: 0 
         (301 letters)

Database: TAIR9_pep 
           33,410 sequences; 13,434,913 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT1G50575.1 | Symbols:  | lysine decarboxylase family protein | ...   368   e-102

>AT1G50575.1 | Symbols:  | lysine decarboxylase family protein |
           chr1:18728862-18730296 REVERSE
          Length = 306

 Score =  368 bits (945), Expect = e-102,   Method: Compositional matrix adjust.
 Identities = 171/253 (67%), Positives = 205/253 (81%)

Query: 47  STRRISLCKNKLVDFDERTSPNEVRREIERCYNLIQRLGRGVVYLGSSRMGPDHPHYLQV 106
           S R +     K  DF ER+SP EV++E+E C++L+ RLGRG+VYLGS+R+ P+H HYLQ 
Sbjct: 50  SARALKCRSVKSEDFVERSSPFEVKKELEICFDLVHRLGRGIVYLGSARIPPNHSHYLQA 109

Query: 107 LELGREVAKLLDCTSWTGAGPGLMDAAIKGALEAGKPVGGFKIAKEAGEWTASNFHAYLP 166
            EL RE A LLDCT+W+GAGPGLMDA  +GALEA KPVGG KI KEAGEWTAS FH YLP
Sbjct: 110 QELSREAATLLDCTTWSGAGPGLMDAVTEGALEAEKPVGGIKIEKEAGEWTASKFHPYLP 169

Query: 167 SETYLTCRFFSARKHGLVDAAVRNNSSDKTAVVALPGGIGTLDEMFEILALIQLERIGSE 226
            + Y TCRFFSARKHGLVDA +RNN S+KTA++ALPGGIGTLDEMFEILALIQLERIGS 
Sbjct: 170 PQNYHTCRFFSARKHGLVDAVIRNNVSEKTAIIALPGGIGTLDEMFEILALIQLERIGSA 229

Query: 227 LPVPFIVMNYDSFYQKLLDFIQNCEDWGTVSRGEVASLWKVCNNNSDALAYLTDFYNIHS 286
           LPVPFIVMNYD+FY KLL+FI+ CE+ GTVS+GEV++LWKVCNNN +AL YL +FY++  
Sbjct: 230 LPVPFIVMNYDAFYSKLLEFIETCENLGTVSKGEVSALWKVCNNNFEALTYLAEFYDLPD 289

Query: 287 SSDEDRHDKKLTT 299
            S +   + + TT
Sbjct: 290 GSAKLETELRKTT 302