Jatropha Genome Database

JcCB0186021.10
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCB0186021.10 + phase: 0 
         (82 letters)

Database: TAIR9_pep 
           33,410 sequences; 13,434,913 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT5G27700.1 | Symbols:  | structural constituent of ribosome | c...   150   1e-37
AT3G53890.2 | Symbols:  | 40S ribosomal protein S21 (RPS21B) | c...   150   2e-37
AT3G53890.1 | Symbols:  | 40S ribosomal protein S21 (RPS21B) | c...   150   2e-37

>AT5G27700.1 | Symbols:  | structural constituent of ribosome |
          chr5:9807541-9808048 REVERSE
          Length = 82

 Score =  150 bits (380), Expect = 1e-37,   Method: Compositional matrix adjust.
 Identities = 70/81 (86%), Positives = 75/81 (92%)

Query: 1  MQNDEGQNMDLYIPRKCSATNRLITSKDHASVQINIGHLDANGNYTGQFTTFALCGFVRA 60
          MQN+EGQ  +LYIPRKCSATNRLITSKDHASVQ+NIGHLDANG YTGQFTTFALCGFVRA
Sbjct: 1  MQNEEGQVTELYIPRKCSATNRLITSKDHASVQLNIGHLDANGLYTGQFTTFALCGFVRA 60

Query: 61 QGDADSALDRLWLKKKVELRQ 81
          QGDADS +DRLW KKKVE +Q
Sbjct: 61 QGDADSGVDRLWQKKKVEAKQ 81


>AT3G53890.2 | Symbols:  | 40S ribosomal protein S21 (RPS21B) |
          chr3:19955582-19956049 REVERSE
          Length = 82

 Score =  150 bits (378), Expect = 2e-37,   Method: Compositional matrix adjust.
 Identities = 69/82 (84%), Positives = 75/82 (91%)

Query: 1  MQNDEGQNMDLYIPRKCSATNRLITSKDHASVQINIGHLDANGNYTGQFTTFALCGFVRA 60
          M+ND GQ  +LYIPRKCSATNR+ITSKDHASVQ+NIGHLDANG YTGQFTTFALCGFVRA
Sbjct: 1  MENDAGQVTELYIPRKCSATNRMITSKDHASVQLNIGHLDANGLYTGQFTTFALCGFVRA 60

Query: 61 QGDADSALDRLWLKKKVELRQQ 82
          QGDADS +DRLW KKKVE +QQ
Sbjct: 61 QGDADSGVDRLWQKKKVEAKQQ 82


>AT3G53890.1 | Symbols:  | 40S ribosomal protein S21 (RPS21B) |
          chr3:19955582-19956049 REVERSE
          Length = 82

 Score =  150 bits (378), Expect = 2e-37,   Method: Compositional matrix adjust.
 Identities = 69/82 (84%), Positives = 75/82 (91%)

Query: 1  MQNDEGQNMDLYIPRKCSATNRLITSKDHASVQINIGHLDANGNYTGQFTTFALCGFVRA 60
          M+ND GQ  +LYIPRKCSATNR+ITSKDHASVQ+NIGHLDANG YTGQFTTFALCGFVRA
Sbjct: 1  MENDAGQVTELYIPRKCSATNRMITSKDHASVQLNIGHLDANGLYTGQFTTFALCGFVRA 60

Query: 61 QGDADSALDRLWLKKKVELRQQ 82
          QGDADS +DRLW KKKVE +QQ
Sbjct: 61 QGDADSGVDRLWQKKKVEAKQQ 82