Jatropha Genome Database

JcCB0185581.10
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCB0185581.10 + phase: 0 /partial
         (265 letters)

Database: TAIR9_pep 
           33,410 sequences; 13,434,913 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT5G67220.1 | Symbols:  | nitrogen regulation family protein | c...   353   8e-98
AT3G49640.1 | Symbols:  | FAD binding / catalytic/ tRNA dihydrou...   100   1e-21
AT3G49640.2 | Symbols:  | FAD binding / catalytic/ tRNA dihydrou...    83   2e-16
AT3G63510.1 | Symbols:  | FAD binding / catalytic/ tRNA dihydrou...    65   3e-11
AT4G38890.1 | Symbols:  | dihydrouridine synthase family protein...    65   3e-11
AT5G47970.2 | Symbols:  | nitrogen regulation family protein | c...    56   2e-08
AT5G47970.1 | Symbols:  | nitrogen regulation family protein | c...    56   2e-08
AT3G63510.2 | Symbols:  | FAD binding / catalytic/ tRNA dihydrou...    55   3e-08

>AT5G67220.1 | Symbols:  | nitrogen regulation family protein |
           chr5:26820276-26821926 REVERSE
          Length = 423

 Score =  353 bits (905), Expect = 8e-98,   Method: Compositional matrix adjust.
 Identities = 166/198 (83%), Positives = 180/198 (90%), Gaps = 1/198 (0%)

Query: 68  DTASSCCLDPVGRYLNGESRVERAWAHWTKLGRPKLIVAPMVDNSELPFRMLCRKYGAEA 127
           DTA +    P  R L+ ++RVERAWAHW KLGRPK IVAPMVDNSELPFR+LC+KYGA+A
Sbjct: 56  DTAPASLGSP-SRVLSIDTRVERAWAHWKKLGRPKYIVAPMVDNSELPFRLLCQKYGAQA 114

Query: 128 AYTPMLHSRIFTENEKYRDQEFTTCKEDRPLFVQFCANDPEILLEAARRVEPYCDYVDIN 187
           AYTPMLHSRIFTE EKYR+QEFTTCKEDRPLFVQFCANDP+ LLEAA+RVEPYCDYVDIN
Sbjct: 115 AYTPMLHSRIFTETEKYRNQEFTTCKEDRPLFVQFCANDPDTLLEAAKRVEPYCDYVDIN 174

Query: 188 LGCPQRIARRGNYGAFLMDKLPLVKSLVEKLTLNLNVPVSCKIRVFPKLEDTINYARMLE 247
           LGCPQRIARRGNYGAFLMD LPLVKSLVEKL  NLNVPVSCKIR+FP LEDT+ YA+MLE
Sbjct: 175 LGCPQRIARRGNYGAFLMDNLPLVKSLVEKLAQNLNVPVSCKIRIFPNLEDTLKYAKMLE 234

Query: 248 EAGCSLLAVHGRTRDEKD 265
           +AGCSLLAVHGRTRDEKD
Sbjct: 235 DAGCSLLAVHGRTRDEKD 252


>AT3G49640.1 | Symbols:  | FAD binding / catalytic/ tRNA
           dihydrouridine synthase | chr3:18400480-18402809 REVERSE
          Length = 329

 Score = 99.8 bits (247), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 64/174 (36%), Positives = 91/174 (52%), Gaps = 16/174 (9%)

Query: 102 KLIVAPMVDNSELPFRMLCRKYGAEAAYTPML--HSRIFTEN------------EKYRDQ 147
           KL++APMV    L FRML  +YGA+  Y   +  H  +  E             EK  D 
Sbjct: 6   KLVLAPMVRVGTLSFRMLAAEYGADITYGEEIIDHKLVKCERRLNVASGTSEFVEKGTDN 65

Query: 148 E-FTTCKEDRPLFV-QFCANDPEILLEAARRVEPYCDYVDINLGCPQRIARRGNYGAFLM 205
             F+TC E++   V Q   +D    L+A+  V      +DIN+GCP+  + +G  GA L+
Sbjct: 66  VVFSTCDEEKSRVVFQMGTSDAVRALKASEIVCNDVATIDINMGCPKAFSIQGGMGAALL 125

Query: 206 DKLPLVKSLVEKLTLNLNVPVSCKIRVFPKLEDTINYARMLEEAGCSLLAVHGR 259
            K  L+  ++  L  NL+VPV+CKIR+     DT+  AR +E+ G   LAVHGR
Sbjct: 126 SKPELIHDILATLKRNLDVPVTCKIRLLKSPADTVELARRIEKLGVPALAVHGR 179


>AT3G49640.2 | Symbols:  | FAD binding / catalytic/ tRNA
           dihydrouridine synthase | chr3:18400480-18402593 REVERSE
          Length = 290

 Score = 82.8 bits (203), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 44/112 (39%), Positives = 65/112 (58%), Gaps = 1/112 (0%)

Query: 149 FTTCKEDRPLFV-QFCANDPEILLEAARRVEPYCDYVDINLGCPQRIARRGNYGAFLMDK 207
           F+TC E++   V Q   +D    L+A+  V      +DIN+GCP+  + +G  GA L+ K
Sbjct: 29  FSTCDEEKSRVVFQMGTSDAVRALKASEIVCNDVATIDINMGCPKAFSIQGGMGAALLSK 88

Query: 208 LPLVKSLVEKLTLNLNVPVSCKIRVFPKLEDTINYARMLEEAGCSLLAVHGR 259
             L+  ++  L  NL+VPV+CKIR+     DT+  AR +E+ G   LAVHGR
Sbjct: 89  PELIHDILATLKRNLDVPVTCKIRLLKSPADTVELARRIEKLGVPALAVHGR 140


>AT3G63510.1 | Symbols:  | FAD binding / catalytic/ tRNA
           dihydrouridine synthase | chr3:23450542-23452682 FORWARD
          Length = 419

 Score = 65.5 bits (158), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 41/135 (30%), Positives = 67/135 (49%), Gaps = 3/135 (2%)

Query: 101 PKLIVAPMVDNSELPFRMLCRKYGAEA-AYTPMLHSRIFTENEKYRDQEFTTCKEDRPLF 159
           P   VAPM+D ++  +R L R     A  YT M+ +      +   D+      +  P+ 
Sbjct: 52  PSFSVAPMMDWTDNHYRTLARLITKHAWLYTEMIAAETLVHQQTNLDRFLAFSPQQHPIV 111

Query: 160 VQFCANDPEILLEAARRVEPYC-DYVDINLGCPQ-RIARRGNYGAFLMDKLPLVKSLVEK 217
           +Q   ++ E L +AA+  + Y  D +++N GCP  ++A  G +G  LM K  LV   +  
Sbjct: 112 LQLGGSNVENLAKAAKLSDAYGYDEINLNCGCPSPKVAGHGCFGVSLMLKPKLVGEAMSA 171

Query: 218 LTLNLNVPVSCKIRV 232
           +  N NVPV+ K R+
Sbjct: 172 IAANTNVPVTVKCRI 186


>AT4G38890.1 | Symbols:  | dihydrouridine synthase family protein |
           chr4:18135909-18139100 REVERSE
          Length = 700

 Score = 65.5 bits (158), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 41/169 (24%), Positives = 77/169 (45%), Gaps = 4/169 (2%)

Query: 100 RPKLIVAPMVDNSELPFRMLCRKYGAEAAYTPMLHSRIFTENEKYRDQEFTTCKEDRPLF 159
           R KL +AP+     LPFR LC+  GA+     M       + +            +    
Sbjct: 346 RDKLYLAPLTTVGNLPFRRLCKVLGADVTCGEMAMCTNLLQGQASEWALLRRHSSEDLFG 405

Query: 160 VQFCANDPEILLEAARRVEPYC--DYVDINLGCPQRIARRGNYGAFLMDKLPLVKSLVEK 217
           VQ C + P+ +      ++  C  D++DIN+GCP  +    + G+ L++K   +K++VE 
Sbjct: 406 VQICGSYPDTVSRVVELIDRECTVDFIDINMGCPIDMVVNKSAGSALLNKPLRMKNIVEV 465

Query: 218 LTLNLNVPVSCKIRV--FPKLEDTINYARMLEEAGCSLLAVHGRTRDEK 264
            +  +  P++ K+R   F       +    +   G + + +HGR+R ++
Sbjct: 466 SSSIVETPITIKVRTAFFEGKNRIDSLIADIGNWGATAVTIHGRSRQQR 514


>AT5G47970.2 | Symbols:  | nitrogen regulation family protein |
           chr5:19423420-19425585 FORWARD
          Length = 387

 Score = 56.2 bits (134), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 40/144 (27%), Positives = 62/144 (43%), Gaps = 3/144 (2%)

Query: 101 PKLIVAPMVDNSELPFRMLCRKYGAEA-AYTPMLHSRIFTENEKYRDQEFTTCKEDRPLF 159
           P   +APM+  ++  +R L R     A  YT ML +      E   D       +  P+ 
Sbjct: 10  PLFSIAPMMGWTDNHYRTLARLITKHAWLYTEMLAAETIVYQEDNLDSFLAFSPDQHPIV 69

Query: 160 VQFCANDPEILLEAARRVEPYC-DYVDINLGCPQ-RIARRGNYGAFLMDKLPLVKSLVEK 217
           +Q    + E L +A R    Y  D ++ N GCP  +++ RG +GA LM     V   +  
Sbjct: 70  LQIGGRNLENLAKATRLANAYAYDEINFNCGCPSPKVSGRGCFGALLMLDPKFVGEAMSV 129

Query: 218 LTLNLNVPVSCKIRVFPKLEDTIN 241
           +  N N  V+ K R+     D+ N
Sbjct: 130 IAANTNAAVTVKCRIGVDDHDSYN 153


>AT5G47970.1 | Symbols:  | nitrogen regulation family protein |
           chr5:19423420-19425585 FORWARD
          Length = 387

 Score = 56.2 bits (134), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 40/144 (27%), Positives = 62/144 (43%), Gaps = 3/144 (2%)

Query: 101 PKLIVAPMVDNSELPFRMLCRKYGAEA-AYTPMLHSRIFTENEKYRDQEFTTCKEDRPLF 159
           P   +APM+  ++  +R L R     A  YT ML +      E   D       +  P+ 
Sbjct: 10  PLFSIAPMMGWTDNHYRTLARLITKHAWLYTEMLAAETIVYQEDNLDSFLAFSPDQHPIV 69

Query: 160 VQFCANDPEILLEAARRVEPYC-DYVDINLGCPQ-RIARRGNYGAFLMDKLPLVKSLVEK 217
           +Q    + E L +A R    Y  D ++ N GCP  +++ RG +GA LM     V   +  
Sbjct: 70  LQIGGRNLENLAKATRLANAYAYDEINFNCGCPSPKVSGRGCFGALLMLDPKFVGEAMSV 129

Query: 218 LTLNLNVPVSCKIRVFPKLEDTIN 241
           +  N N  V+ K R+     D+ N
Sbjct: 130 IAANTNAAVTVKCRIGVDDHDSYN 153


>AT3G63510.2 | Symbols:  | FAD binding / catalytic/ tRNA
           dihydrouridine synthase | chr3:23450615-23452682 FORWARD
          Length = 386

 Score = 55.5 bits (132), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 35/120 (29%), Positives = 58/120 (48%), Gaps = 3/120 (2%)

Query: 116 FRMLCRKYGAEA-AYTPMLHSRIFTENEKYRDQEFTTCKEDRPLFVQFCANDPEILLEAA 174
           +R L R     A  YT M+ +      +   D+      +  P+ +Q   ++ E L +AA
Sbjct: 34  YRTLARLITKHAWLYTEMIAAETLVHQQTNLDRFLAFSPQQHPIVLQLGGSNVENLAKAA 93

Query: 175 RRVEPYC-DYVDINLGCPQ-RIARRGNYGAFLMDKLPLVKSLVEKLTLNLNVPVSCKIRV 232
           +  + Y  D +++N GCP  ++A  G +G  LM K  LV   +  +  N NVPV+ K R+
Sbjct: 94  KLSDAYGYDEINLNCGCPSPKVAGHGCFGVSLMLKPKLVGEAMSAIAANTNVPVTVKCRI 153