Jatropha Genome Database

JcCB0183721.10
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCB0183721.10 - phase: 2 /partial
         (310 letters)

Database: TAIR9_pep 
           33,410 sequences; 13,434,913 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT2G44140.1 | Symbols:  | autophagy 4a (APG4a) | chr2:18255106-1...   382   e-106
AT3G59950.1 | Symbols:  | autophagy 4b (APG4b) | chr3:22144468-2...   368   e-102
AT2G44140.2 | Symbols:  | autophagy 4a (APG4a) | chr2:18255106-1...   366   e-101
AT3G59950.3 | Symbols:  | autophagy 4b (APG4b) | chr3:22145559-2...   287   5e-78
AT3G59950.2 | Symbols:  | autophagy 4b (APG4b) | chr3:22145271-2...   286   1e-77

>AT2G44140.1 | Symbols:  | autophagy 4a (APG4a) |
           chr2:18255106-18257165 REVERSE
          Length = 467

 Score =  382 bits (982), Expect = e-106,   Method: Compositional matrix adjust.
 Identities = 190/331 (57%), Positives = 241/331 (72%), Gaps = 25/331 (7%)

Query: 1   LWSSFFTAAFSVFETYRESPPTTSEKKGSHTRNNGWTSAVKKI-VAGGSMRRIHERVLGP 59
           LWS+ FT++ SV + YRES  +TS  K   T  NGWT+ VK++ +A G++RR  ERVLGP
Sbjct: 42  LWSNVFTSSSSVSQPYRES--STSGHKQVCTTRNGWTAFVKRVSMASGAIRRFQERVLGP 99

Query: 60  SRTGISNTTSEIWLLGVCYKISQDGSNADAATS---------------------FDAIGD 98
           +RTG+ +TTS++WLLGVCYKIS D ++ +  T                      F+   D
Sbjct: 100 NRTGLPSTTSDVWLLGVCYKISADENSGETDTGTVLAALQLDFSSKILMTYRKGFEPFRD 159

Query: 99  SKFTSDVGWGCMLRSSQMLVAQALLFHQLGRSWRKPIQKPLDQKYVEILHLFGDSEASPF 158
           + +TSDV WGCM+RSSQML AQALLFH+LGR+W K  + P +Q+Y+E L  FGDSE S F
Sbjct: 160 TTYTSDVNWGCMIRSSQMLFAQALLFHRLGRAWTKKSELP-EQEYLETLEPFGDSEPSAF 218

Query: 159 SIHNLIHAGKAYGLAAGSWVGPYAMCRSWELLARCKREENNLEHEALPMAVYVVSGDEDG 218
           SIHNLI AG +YGLAAGSWVGPYA+CR+WE LA  KR++ + +++ LPMAV++VSG EDG
Sbjct: 219 SIHNLIIAGASYGLAAGSWVGPYAICRAWESLACKKRKQTDSKNQTLPMAVHIVSGSEDG 278

Query: 219 ERGGAPVVCIEDASRHCLDFSRGQANWTPIXXXXXXXXXXEKVNLRYIPSLQATLTFPQS 278
           ERGGAP++CIEDA++ CL+FS+GQ+ WTPI          + VN RYIPSL AT TFPQS
Sbjct: 279 ERGGAPILCIEDATKSCLEFSKGQSEWTPIILLVPLVLGLDSVNPRYIPSLVATFTFPQS 338

Query: 279 LGIMGGKPGASTYIVGVQDDNAFYLDPHGVQ 309
           +GI+GGKPGASTYIVGVQ+D  FYLDPH VQ
Sbjct: 339 VGILGGKPGASTYIVGVQEDKGFYLDPHEVQ 369


>AT3G59950.1 | Symbols:  | autophagy 4b (APG4b) |
           chr3:22144468-22146887 REVERSE
          Length = 477

 Score =  368 bits (944), Expect = e-102,   Method: Compositional matrix adjust.
 Identities = 181/301 (60%), Positives = 221/301 (73%), Gaps = 22/301 (7%)

Query: 31  TRNNGWTSAVKKI-VAGGSMRRIHERVLGPSRTGISNTTSEIWLLGVCYKISQDGSNADA 89
           T ++ WT  +K   +A G++RR  +RVLGPSRTGIS++TSEIWLLGVCYKIS+  S+ +A
Sbjct: 73  TTHSSWTVILKTASMASGAIRRFQDRVLGPSRTGISSSTSEIWLLGVCYKISEGESSEEA 132

Query: 90  ATS---------------------FDAIGDSKFTSDVGWGCMLRSSQMLVAQALLFHQLG 128
                                   F+ IGD+ +TSDV WGCMLRS QML AQALLF +LG
Sbjct: 133 DAGRVLAAFRQDFSSLILMTYRRGFEPIGDTTYTSDVNWGCMLRSGQMLFAQALLFQRLG 192

Query: 129 RSWRKPIQKPLDQKYVEILHLFGDSEASPFSIHNLIHAGKAYGLAAGSWVGPYAMCRSWE 188
           RSWRK   +P D+KY+EIL LFGD+EAS FSIHNLI AG++YGLAAGSWVGPYA+CRSWE
Sbjct: 193 RSWRKKDSEPADEKYLEILELFGDTEASAFSIHNLILAGESYGLAAGSWVGPYAVCRSWE 252

Query: 189 LLARCKREENNLEHEALPMAVYVVSGDEDGERGGAPVVCIEDASRHCLDFSRGQANWTPI 248
            LAR  +EE + +H++  MAV++VSG EDGERGGAP++CIED ++ CL+FS G+  W PI
Sbjct: 253 SLARKNKEETDDKHKSFSMAVHIVSGSEDGERGGAPILCIEDVTKTCLEFSEGETEWPPI 312

Query: 249 XXXXXXXXXXEKVNLRYIPSLQATLTFPQSLGIMGGKPGASTYIVGVQDDNAFYLDPHGV 308
                     ++VN RYIPSL AT TFPQSLGI+GGKPGASTYIVGVQ+D  FYLDPH V
Sbjct: 313 LLLVPLVLGLDRVNPRYIPSLIATFTFPQSLGILGGKPGASTYIVGVQEDKGFYLDPHDV 372

Query: 309 Q 309
           Q
Sbjct: 373 Q 373


>AT2G44140.2 | Symbols:  | autophagy 4a (APG4a) |
           chr2:18255106-18257206 REVERSE
          Length = 422

 Score =  366 bits (939), Expect = e-101,   Method: Compositional matrix adjust.
 Identities = 182/315 (57%), Positives = 229/315 (72%), Gaps = 25/315 (7%)

Query: 17  RESPPTTSEKKGSHTRNNGWTSAVKKI-VAGGSMRRIHERVLGPSRTGISNTTSEIWLLG 75
           RES  +TS  K   T  NGWT+ VK++ +A G++RR  ERVLGP+RTG+ +TTS++WLLG
Sbjct: 13  RES--STSGHKQVCTTRNGWTAFVKRVSMASGAIRRFQERVLGPNRTGLPSTTSDVWLLG 70

Query: 76  VCYKISQDGSNADAATS---------------------FDAIGDSKFTSDVGWGCMLRSS 114
           VCYKIS D ++ +  T                      F+   D+ +TSDV WGCM+RSS
Sbjct: 71  VCYKISADENSGETDTGTVLAALQLDFSSKILMTYRKGFEPFRDTTYTSDVNWGCMIRSS 130

Query: 115 QMLVAQALLFHQLGRSWRKPIQKPLDQKYVEILHLFGDSEASPFSIHNLIHAGKAYGLAA 174
           QML AQALLFH+LGR+W K  + P +Q+Y+E L  FGDSE S FSIHNLI AG +YGLAA
Sbjct: 131 QMLFAQALLFHRLGRAWTKKSELP-EQEYLETLEPFGDSEPSAFSIHNLIIAGASYGLAA 189

Query: 175 GSWVGPYAMCRSWELLARCKREENNLEHEALPMAVYVVSGDEDGERGGAPVVCIEDASRH 234
           GSWVGPYA+CR+WE LA  KR++ + +++ LPMAV++VSG EDGERGGAP++CIEDA++ 
Sbjct: 190 GSWVGPYAICRAWESLACKKRKQTDSKNQTLPMAVHIVSGSEDGERGGAPILCIEDATKS 249

Query: 235 CLDFSRGQANWTPIXXXXXXXXXXEKVNLRYIPSLQATLTFPQSLGIMGGKPGASTYIVG 294
           CL+FS+GQ+ WTPI          + VN RYIPSL AT TFPQS+GI+GGKPGASTYIVG
Sbjct: 250 CLEFSKGQSEWTPIILLVPLVLGLDSVNPRYIPSLVATFTFPQSVGILGGKPGASTYIVG 309

Query: 295 VQDDNAFYLDPHGVQ 309
           VQ+D  FYLDPH VQ
Sbjct: 310 VQEDKGFYLDPHEVQ 324


>AT3G59950.3 | Symbols:  | autophagy 4b (APG4b) |
           chr3:22145559-22146629 REVERSE
          Length = 267

 Score =  287 bits (735), Expect = 5e-78,   Method: Compositional matrix adjust.
 Identities = 139/244 (56%), Positives = 176/244 (72%), Gaps = 21/244 (8%)

Query: 44  VAGGSMRRIHERVLGPSRTGISNTTSEIWLLGVCYKISQDGSNADAATS----------- 92
           +A G++RR  +RVLGPSRTGIS++TSEIWLLGVCYKIS+  S+ +A              
Sbjct: 1   MASGAIRRFQDRVLGPSRTGISSSTSEIWLLGVCYKISEGESSEEADAGRVLAAFRQDFS 60

Query: 93  ----------FDAIGDSKFTSDVGWGCMLRSSQMLVAQALLFHQLGRSWRKPIQKPLDQK 142
                     F+ IGD+ +TSDV WGCMLRS QML AQALLF +LGRSWRK   +P D+K
Sbjct: 61  SLILMTYRRGFEPIGDTTYTSDVNWGCMLRSGQMLFAQALLFQRLGRSWRKKDSEPADEK 120

Query: 143 YVEILHLFGDSEASPFSIHNLIHAGKAYGLAAGSWVGPYAMCRSWELLARCKREENNLEH 202
           Y+EIL LFGD+EAS FSIHNLI AG++YGLAAGSWVGPYA+CRSWE LAR  +EE + +H
Sbjct: 121 YLEILELFGDTEASAFSIHNLILAGESYGLAAGSWVGPYAVCRSWESLARKNKEETDDKH 180

Query: 203 EALPMAVYVVSGDEDGERGGAPVVCIEDASRHCLDFSRGQANWTPIXXXXXXXXXXEKVN 262
           ++  MAV++VSG EDGERGGAP++CIED ++ CL+FS G+  W PI          ++VN
Sbjct: 181 KSFSMAVHIVSGSEDGERGGAPILCIEDVTKTCLEFSEGETEWPPILLLVPLVLGLDRVN 240

Query: 263 LRYI 266
            R++
Sbjct: 241 PRFV 244


>AT3G59950.2 | Symbols:  | autophagy 4b (APG4b) |
           chr3:22145271-22146887 REVERSE
          Length = 360

 Score =  286 bits (731), Expect = 1e-77,   Method: Compositional matrix adjust.
 Identities = 142/254 (55%), Positives = 180/254 (70%), Gaps = 22/254 (8%)

Query: 31  TRNNGWTSAVKKI-VAGGSMRRIHERVLGPSRTGISNTTSEIWLLGVCYKISQDGSNADA 89
           T ++ WT  +K   +A G++RR  +RVLGPSRTGIS++TSEIWLLGVCYKIS+  S+ +A
Sbjct: 73  TTHSSWTVILKTASMASGAIRRFQDRVLGPSRTGISSSTSEIWLLGVCYKISEGESSEEA 132

Query: 90  ATS---------------------FDAIGDSKFTSDVGWGCMLRSSQMLVAQALLFHQLG 128
                                   F+ IGD+ +TSDV WGCMLRS QML AQALLF +LG
Sbjct: 133 DAGRVLAAFRQDFSSLILMTYRRGFEPIGDTTYTSDVNWGCMLRSGQMLFAQALLFQRLG 192

Query: 129 RSWRKPIQKPLDQKYVEILHLFGDSEASPFSIHNLIHAGKAYGLAAGSWVGPYAMCRSWE 188
           RSWRK   +P D+KY+EIL LFGD+EAS FSIHNLI AG++YGLAAGSWVGPYA+CRSWE
Sbjct: 193 RSWRKKDSEPADEKYLEILELFGDTEASAFSIHNLILAGESYGLAAGSWVGPYAVCRSWE 252

Query: 189 LLARCKREENNLEHEALPMAVYVVSGDEDGERGGAPVVCIEDASRHCLDFSRGQANWTPI 248
            LAR  +EE + +H++  MAV++VSG EDGERGGAP++CIED ++ CL+FS G+  W PI
Sbjct: 253 SLARKNKEETDDKHKSFSMAVHIVSGSEDGERGGAPILCIEDVTKTCLEFSEGETEWPPI 312

Query: 249 XXXXXXXXXXEKVN 262
                     ++VN
Sbjct: 313 LLLVPLVLGLDRVN 326