Jatropha Genome Database
- JcCB0183341.20
BLASTP 2.2.23 [Feb-03-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= JcCB0183341.20 - phase: 0 /pseudo/partial
(437 letters)
Database: TAIR9_pep
33,410 sequences; 13,434,913 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AT4G30080.1 | Symbols: ARF16 | ARF16 (AUXIN RESPONSE FACTOR 16);... 437 e-123
AT2G28350.1 | Symbols: ARF10 | ARF10 (AUXIN RESPONSE FACTOR 10);... 420 e-118
AT1G77850.1 | Symbols: ARF17 | ARF17 (AUXIN RESPONSE FACTOR 17);... 239 2e-63
AT5G62000.3 | Symbols: ARF2, ARF1-BP, HSS | ARF2 (AUXIN RESPONSE... 166 3e-41
AT5G62000.2 | Symbols: ARF2, ARF1-BP, HSS | ARF2 (AUXIN RESPONSE... 166 3e-41
AT5G62000.1 | Symbols: ARF2, ARF1-BP, HSS | ARF2 (AUXIN RESPONSE... 166 3e-41
AT5G60450.1 | Symbols: ARF4 | ARF4 (AUXIN RESPONSE FACTOR 4); tr... 159 4e-39
AT2G33860.1 | Symbols: ETT, ARF3 | ETT (ETTIN); DNA binding / tr... 154 9e-38
AT1G59750.2 | Symbols: ARF1 | ARF1 (AUXIN RESPONSE FACTOR 1); DN... 152 3e-37
AT1G59750.3 | Symbols: ARF1 | ARF1 (AUXIN RESPONSE FACTOR 1); DN... 152 4e-37
AT1G59750.1 | Symbols: ARF1 | ARF1 (AUXIN RESPONSE FACTOR 1); DN... 152 4e-37
AT3G61830.1 | Symbols: ARF18 | ARF18 (AUXIN RESPONSE FACTOR 18);... 146 3e-35
AT1G19220.1 | Symbols: ARF19, IAA22, ARF11 | ARF19 (AUXIN RESPON... 146 3e-35
AT2G46530.2 | Symbols: ARF11 | ARF11 (AUXIN RESPONSE FACTOR 11);... 145 4e-35
AT2G46530.1 | Symbols: ARF11 | ARF11 (AUXIN RESPONSE FACTOR 11);... 145 5e-35
AT2G46530.3 | Symbols: ARF11 | ARF11 (AUXIN RESPONSE FACTOR 11);... 145 6e-35
AT5G37020.1 | Symbols: ARF8, ATARF8 | ARF8 (AUXIN RESPONSE FACTO... 144 1e-34
AT5G37020.2 | Symbols: ARF8 | ARF8 (AUXIN RESPONSE FACTOR 8); tr... 144 1e-34
AT1G19850.1 | Symbols: MP, ARF5, IAA24 | MP (MONOPTEROS); transc... 144 2e-34
AT1G35520.1 | Symbols: ARF15 | ARF15 (AUXIN RESPONSE FACTOR 15);... 137 2e-32
AT1G35240.1 | Symbols: ARF20 | ARF20 (AUXIN RESPONSE FACTOR 20);... 135 4e-32
AT1G34310.1 | Symbols: ARF12 | ARF12 (AUXIN RESPONSE FACTOR 12);... 135 5e-32
AT1G34410.1 | Symbols: ARF21 | ARF21 (AUXIN RESPONSE FACTOR 21);... 132 4e-31
AT1G34390.1 | Symbols: ARF22 | ARF22 (AUXIN RESPONSE FACTOR 22);... 131 9e-31
AT1G35540.1 | Symbols: ARF14 | ARF14 (AUXIN RESPONSE FACTOR 14);... 129 3e-30
AT1G34170.1 | Symbols: ARF13 | transcription factor | chr1:12444... 125 4e-29
AT4G23980.2 | Symbols: ARF9 | ARF9 (AUXIN RESPONSE FACTOR 9); tr... 120 2e-27
AT4G23980.1 | Symbols: ARF9 | ARF9 (AUXIN RESPONSE FACTOR 9); tr... 120 2e-27
AT1G34170.2 | Symbols: ARF13 | transcription factor | chr1:12444... 107 2e-23
AT1G34170.3 | Symbols: | transcription factor | chr1:12443578-1... 106 3e-23
AT5G20730.3 | Symbols: NPH4, MSG1, IAA21, ARF7, TIR5, BIP, IAA23... 103 2e-22
AT5G20730.2 | Symbols: NPH4, MSG1, IAA21, ARF7, TIR5, BIP | NPH4... 103 2e-22
AT5G20730.1 | Symbols: NPH4, MSG1, IAA21, ARF7, TIR5, BIP | NPH4... 103 2e-22
AT1G30330.2 | Symbols: ARF6 | ARF6 (AUXIN RESPONSE FACTOR 6); tr... 102 4e-22
AT1G30330.1 | Symbols: ARF6 | ARF6 (AUXIN RESPONSE FACTOR 6); tr... 102 4e-22
ATMG00940.1 | Symbols: ORF164 | hypothetical protein | chrM:2514... 90 2e-18
AT1G43950.1 | Symbols: ARF23 | ARF23 (AUXIN RESPONSE FACTOR 23);... 71 1e-12
AT1G13260.1 | Symbols: RAV1 | RAV1; DNA binding / transcription ... 58 1e-08
AT3G25730.1 | Symbols: | AP2 domain-containing transcription fa... 57 3e-08
AT2G36080.1 | Symbols: | DNA-binding protein, putative | chr2:1... 54 2e-07
AT5G06250.2 | Symbols: | transcription factor | chr5:1892714-18... 53 3e-07
AT4G01500.1 | Symbols: NGA4 | NGA4 (NGATHA4); transcription fact... 53 3e-07
AT2G36080.2 | Symbols: | DNA-binding protein, putative | chr2:1... 53 4e-07
AT1G68840.1 | Symbols: RAV2, RAP2.8, TEM2 | RAV2 (REGULATOR OF T... 53 4e-07
AT5G06250.1 | Symbols: | transcription factor | chr5:1892714-18... 53 4e-07
AT2G46870.1 | Symbols: NGA1 | NGA1 (NGATHA1); transcription fact... 51 2e-06
>AT4G30080.1 | Symbols: ARF16 | ARF16 (AUXIN RESPONSE FACTOR 16);
miRNA binding / transcription factor |
chr4:14703369-14705564 REVERSE
Length = 670
Score = 437 bits (1124), Expect = e-123, Method: Compositional matrix adjust.
Identities = 236/400 (59%), Positives = 278/400 (69%), Gaps = 33/400 (8%)
Query: 1 DPPVQTILAKDVHGETWKFRHIYRGTPRRHLLTTGWSTFVNHKKLVAGDSIVFLRADNGD 60
+PPVQTILAKDVHG+ WKFRHIYRGTPRRHLLTTGWS FVN KKLVAGDSIVF+RA+NGD
Sbjct: 154 EPPVQTILAKDVHGDVWKFRHIYRGTPRRHLLTTGWSNFVNQKKLVAGDSIVFMRAENGD 213
Query: 61 LCVGIRRAKRG-IGGSPESS--WNPAGGNCVMPYGGFTGFLREEDNKIMRXXXXXXXXXX 117
LCVGIRRAKRG IG PE S WNP GG+C G++ LRE+++ +R
Sbjct: 214 LCVGIRRAKRGGIGNGPEYSAGWNPIGGSC-----GYSSLLREDESNSLRRSNCSLADRK 268
Query: 118 XXXXXXXXXXKVKSEAVIEAASLAANGKPFEVVYYPRASTPEFCVKASLVKAALQIRWCS 177
KV +E+VIEAA+LA +G+PFEVVYYPRAST EFCVKA +AA++I WCS
Sbjct: 269 G---------KVTAESVIEAATLAISGRPFEVVYYPRASTSEFCVKALDARAAMRIPWCS 319
Query: 178 GMRFKMAFETEDSSRISWFMGTISSVQVADPIRWPDSPWRLLQVTWDEPDLLQNVKRVSP 237
GMRFKMAFETEDSSRISWFMGT+S+V V+DPIRWP+SPWRLLQV WDEPDLLQNVKRV+P
Sbjct: 320 GMRFKMAFETEDSSRISWFMGTVSAVNVSDPIRWPNSPWRLLQVAWDEPDLLQNVKRVNP 379
Query: 238 WLVELVSNMPTIHLSPFSPPRKKLRLPQHPDF-PLDGQFPIPTFSGNLLGPSSPFGCLPD 296
WLVELVSN+ I L+ FSPPRKK+RLPQHPD+ L P+P+F N L SSP + D
Sbjct: 380 WLVELVSNVHPIPLTSFSPPRKKMRLPQHPDYNNLINSIPVPSFPSNPLIRSSPLSSVLD 439
Query: 297 NTTPAGMQGAR---HAHYGLSLSDLHLNKLHTGLIPAGFPPLLDHTATHTRTSNGPIIQK 353
N P G+QGAR H +YGLS SDLH L+ P L + R +
Sbjct: 440 N-VPVGLQGARHNAHQYYGLSSSDLHHYYLNRPPPPPPPSSLQLSPSLGLRNID------ 492
Query: 354 PSMSESVSCVLTMSHASTQPSKKRNDAKTPHLVLFGQPIL 393
+ +E C LTM +K +K H+VLFG+ IL
Sbjct: 493 -TKNEKGFCFLTMGTTPCNDTK----SKKSHIVLFGKLIL 527
>AT2G28350.1 | Symbols: ARF10 | ARF10 (AUXIN RESPONSE FACTOR 10);
miRNA binding / transcription factor |
chr2:12114331-12116665 FORWARD
Length = 693
Score = 420 bits (1080), Expect = e-118, Method: Compositional matrix adjust.
Identities = 239/412 (58%), Positives = 282/412 (68%), Gaps = 37/412 (8%)
Query: 1 DPPVQTILAKDVHGETWKFRHIYRGTPRRHLLTTGWSTFVNHKKLVAGDSIVFLRADNGD 60
+PPVQT++AKD+HGETWKFRHIYRGTPRRHLLTTGWSTFVN KKL+AGDSIVFLR+++GD
Sbjct: 149 EPPVQTVIAKDIHGETWKFRHIYRGTPRRHLLTTGWSTFVNQKKLIAGDSIVFLRSESGD 208
Query: 61 LCVGIRRAKRGIGGSPESSWNPAGGNCVMPYGGFTGFLREEDNKIMRXXXXXXXXXXXXX 120
LCVGIRRAKRG GS S NP Y GF+GFLR++++
Sbjct: 209 LCVGIRRAKRGGLGSNAGSDNP--------YPGFSGFLRDDESTTTTSKLMMMKRNGNND 260
Query: 121 XXXXXXXKVKSEAVIEAASLAANGKPFEVVYYPRASTPEFCVKASLVKAALQIRWCSGMR 180
+V+ EAV EA + AA G+ FEVVYYPRASTPEFCVKA+ V++A++IRWCSGMR
Sbjct: 261 GNAAATGRVRVEAVAEAVARAACGQAFEVVYYPRASTPEFCVKAADVRSAMRIRWCSGMR 320
Query: 181 FKMAFETEDSSRISWFMGTISSVQVADPIRWPDSPWRLLQVTWDEPDLLQNVKRVSPWLV 240
FKMAFETEDSSRISWFMGT+S+VQVADPIRWP+SPWRLLQV WDEPDLLQNVKRVSPWLV
Sbjct: 321 FKMAFETEDSSRISWFMGTVSAVQVADPIRWPNSPWRLLQVAWDEPDLLQNVKRVSPWLV 380
Query: 241 ELVSNMPTIHLSPFSPPRKKLRLPQHPDFPLDG-QFPI--PTFSGNLLGPSSPFGCLPDN 297
ELVSNMPTIHLSPFS PRKK+R+PQ +FP G +FPI P F+ N G S + +N
Sbjct: 381 ELVSNMPTIHLSPFS-PRKKIRIPQPFEFPFHGTKFPIFSPGFANNGGGESMCYLSNDNN 439
Query: 298 TTPAGMQGARHAH--YGLSLSDLHL----------NKLHT-GLIPAGFPPLLDHTATHTR 344
PAG+QGAR A +G L NKLH+ + + F P H R
Sbjct: 440 NAPAGIQGARQAQQLFGSPSPSLLSDLNLSSYTGNNKLHSPAMFLSSFNP--RHHHYQAR 497
Query: 345 TSNGPIIQKPSMSESVSCVLTMSHASTQPSKKRN--DAKTPHLVLFGQPILT 394
S S ++SC LTM + + KK++ KT VLFGQPILT
Sbjct: 498 DSEN--------SNNISCSLTMGNPAMVQDKKKSVGSVKTHQFVLFGQPILT 541
>AT1G77850.1 | Symbols: ARF17 | ARF17 (AUXIN RESPONSE FACTOR 17);
transcription factor | chr1:29272405-29275193 FORWARD
Length = 585
Score = 239 bits (610), Expect = 2e-63, Method: Compositional matrix adjust.
Identities = 139/323 (43%), Positives = 182/323 (56%), Gaps = 36/323 (11%)
Query: 1 DPPVQTILAKDVHGETWKFRHIYRGTPRRHLLTTGWSTFVNHKKLVAGDSIVFLRADNGD 60
DPPVQ + D+HG W FRHIYRGTPRRHLLTTGWS FVN KKL+AGDS+VF+R +
Sbjct: 153 DPPVQKLYVTDIHGAVWDFRHIYRGTPRRHLLTTGWSKFVNSKKLIAGDSVVFMRKSADE 212
Query: 61 LCVGIRRAKRGIGGSPESSWNPAGGNCVMPYGGFTGFLREEDNKIMRXXXXXXXXXXXXX 120
+ +G+RR S + N Y + +E+D +
Sbjct: 213 MFIGVRRTPISSSDGGSSYYGGDEYNG---YYSQSSVAKEDDGSPKK------------T 257
Query: 121 XXXXXXXKVKSEAVIEAASLAANGKPFEVVYYPRASTPEFCVKASLVKAALQIRWCSGMR 180
K+ +EAV +A + A+ G PFEVV+YP A EF V+A V++++ + W G R
Sbjct: 258 FRRSGNGKLTAEAVTDAINRASQGLPFEVVFYPAAGWSEFVVRAEDVESSMSMYWTPGTR 317
Query: 181 FKMAFETEDSSRISWFMGTISSV-QVADPIRWPDSPWRLLQVTWDEPDLLQNVKRVSPWL 239
KMA ETEDSSRI+WF G +SS Q P W SPW+ LQ+TWDEP++LQNVKRV+PW
Sbjct: 318 VKMAMETEDSSRITWFQGIVSSTYQETGP--WRGSPWKQLQITWDEPEILQNVKRVNPWQ 375
Query: 240 VELVSNMPTIHLSPFSPPRKKLRLPQHPDFPLDGQFPIPTFSGNLLGPSSPF--GCLPD- 296
VE+ ++ +H +PF PP K+L+ PQ L G G +L P S PD
Sbjct: 376 VEIAAHATQLH-TPF-PPAKRLKYPQPGGGFLSGD------DGEILYPQSGLSSAAAPDP 427
Query: 297 -------NTTPAGMQGARHAHYG 312
+T PAGMQGAR +G
Sbjct: 428 SPSMFSYSTFPAGMQGARQYDFG 450
>AT5G62000.3 | Symbols: ARF2, ARF1-BP, HSS | ARF2 (AUXIN RESPONSE
FACTOR 2); protein binding / transcription factor |
chr5:24910859-24914680 FORWARD
Length = 859
Score = 166 bits (419), Expect = 3e-41, Method: Compositional matrix adjust.
Identities = 99/259 (38%), Positives = 126/259 (48%), Gaps = 47/259 (18%)
Query: 2 PPVQTILAKDVHGETWKFRHIYRGTPRRHLLTTGWSTFVNHKKLVAGDSIVFLRADNGDL 61
PP Q ++AKD+H W+FRHI+RG PRRHLL +GWS FV+ K+LVAGD+ +FLR +NG+L
Sbjct: 199 PPTQELVAKDLHANEWRFRHIFRGQPRRHLLQSGWSVFVSSKRLVAGDAFIFLRGENGEL 258
Query: 62 CVGIRRAKRGIGGSPESSWNPAGGNCVMPYGGFTGFLREEDNKIMRXXXXXXXXXXXXXX 121
VG+RRA R G P S + + G L
Sbjct: 259 RVGVRRAMRQQGNVPSS--------VISSHSMHLGVL----------------------- 287
Query: 122 XXXXXXKVKSEAVIEAASLAANGKPFEVVYYPRASTPEFCVKASLVKAALQIRWCSGMRF 181
A + G F V Y PR S EF V +++ + GMRF
Sbjct: 288 -------------ATAWHAISTGTMFTVYYKPRTSPSEFIVPFDQYMESVKNNYSIGMRF 334
Query: 182 KMAFETEDSSRISWFMGTISSVQVADPIRWPDSPWRLLQVTWDEPDLLQNVKRVSPWLVE 241
KM FE E++ F GTI ++ +DP RWP S WR L+V WDE + RVSPW VE
Sbjct: 335 KMRFEGEEAPE-QRFTGTIVGIEESDPTRWPKSKWRSLKVRWDETSSIPRPDRVSPWKVE 393
Query: 242 LVSNMPTIHLSPFSPPRKK 260
P LSP PR K
Sbjct: 394 PALAPPA--LSPVPMPRPK 410
>AT5G62000.2 | Symbols: ARF2, ARF1-BP, HSS | ARF2 (AUXIN RESPONSE
FACTOR 2); protein binding / transcription factor |
chr5:24910859-24914680 FORWARD
Length = 859
Score = 166 bits (419), Expect = 3e-41, Method: Compositional matrix adjust.
Identities = 99/259 (38%), Positives = 126/259 (48%), Gaps = 47/259 (18%)
Query: 2 PPVQTILAKDVHGETWKFRHIYRGTPRRHLLTTGWSTFVNHKKLVAGDSIVFLRADNGDL 61
PP Q ++AKD+H W+FRHI+RG PRRHLL +GWS FV+ K+LVAGD+ +FLR +NG+L
Sbjct: 199 PPTQELVAKDLHANEWRFRHIFRGQPRRHLLQSGWSVFVSSKRLVAGDAFIFLRGENGEL 258
Query: 62 CVGIRRAKRGIGGSPESSWNPAGGNCVMPYGGFTGFLREEDNKIMRXXXXXXXXXXXXXX 121
VG+RRA R G P S + + G L
Sbjct: 259 RVGVRRAMRQQGNVPSS--------VISSHSMHLGVL----------------------- 287
Query: 122 XXXXXXKVKSEAVIEAASLAANGKPFEVVYYPRASTPEFCVKASLVKAALQIRWCSGMRF 181
A + G F V Y PR S EF V +++ + GMRF
Sbjct: 288 -------------ATAWHAISTGTMFTVYYKPRTSPSEFIVPFDQYMESVKNNYSIGMRF 334
Query: 182 KMAFETEDSSRISWFMGTISSVQVADPIRWPDSPWRLLQVTWDEPDLLQNVKRVSPWLVE 241
KM FE E++ F GTI ++ +DP RWP S WR L+V WDE + RVSPW VE
Sbjct: 335 KMRFEGEEAPE-QRFTGTIVGIEESDPTRWPKSKWRSLKVRWDETSSIPRPDRVSPWKVE 393
Query: 242 LVSNMPTIHLSPFSPPRKK 260
P LSP PR K
Sbjct: 394 PALAPPA--LSPVPMPRPK 410
>AT5G62000.1 | Symbols: ARF2, ARF1-BP, HSS | ARF2 (AUXIN RESPONSE
FACTOR 2); protein binding / transcription factor |
chr5:24910859-24914680 FORWARD
Length = 859
Score = 166 bits (419), Expect = 3e-41, Method: Compositional matrix adjust.
Identities = 99/259 (38%), Positives = 126/259 (48%), Gaps = 47/259 (18%)
Query: 2 PPVQTILAKDVHGETWKFRHIYRGTPRRHLLTTGWSTFVNHKKLVAGDSIVFLRADNGDL 61
PP Q ++AKD+H W+FRHI+RG PRRHLL +GWS FV+ K+LVAGD+ +FLR +NG+L
Sbjct: 199 PPTQELVAKDLHANEWRFRHIFRGQPRRHLLQSGWSVFVSSKRLVAGDAFIFLRGENGEL 258
Query: 62 CVGIRRAKRGIGGSPESSWNPAGGNCVMPYGGFTGFLREEDNKIMRXXXXXXXXXXXXXX 121
VG+RRA R G P S + + G L
Sbjct: 259 RVGVRRAMRQQGNVPSS--------VISSHSMHLGVL----------------------- 287
Query: 122 XXXXXXKVKSEAVIEAASLAANGKPFEVVYYPRASTPEFCVKASLVKAALQIRWCSGMRF 181
A + G F V Y PR S EF V +++ + GMRF
Sbjct: 288 -------------ATAWHAISTGTMFTVYYKPRTSPSEFIVPFDQYMESVKNNYSIGMRF 334
Query: 182 KMAFETEDSSRISWFMGTISSVQVADPIRWPDSPWRLLQVTWDEPDLLQNVKRVSPWLVE 241
KM FE E++ F GTI ++ +DP RWP S WR L+V WDE + RVSPW VE
Sbjct: 335 KMRFEGEEAPE-QRFTGTIVGIEESDPTRWPKSKWRSLKVRWDETSSIPRPDRVSPWKVE 393
Query: 242 LVSNMPTIHLSPFSPPRKK 260
P LSP PR K
Sbjct: 394 PALAPPA--LSPVPMPRPK 410
>AT5G60450.1 | Symbols: ARF4 | ARF4 (AUXIN RESPONSE FACTOR 4);
transcription factor | chr5:24308558-24312187 REVERSE
Length = 788
Score = 159 bits (401), Expect = 4e-39, Method: Compositional matrix adjust.
Identities = 97/262 (37%), Positives = 129/262 (49%), Gaps = 56/262 (21%)
Query: 3 PVQTILAKDVHGETWKFRHIYRGTPRRHLLTTGWSTFVNHKKLVAGDSIVFLRADNGDLC 62
P Q ++AKD+HG WKFRHIYRG PRRHLLTTGWS FV+ K LV+GD+++FLR + G+L
Sbjct: 213 PSQELIAKDLHGVEWKFRHIYRGQPRRHLLTTGWSIFVSQKNLVSGDAVLFLRDEGGELR 272
Query: 63 VGIRRAKRGIGGSPESSWNPAGGNCVMPYGGFTGFLREEDNKIMRXXXXXXXXXXXXXXX 122
+GIRRA R G P+S
Sbjct: 273 LGIRRAARPRNGLPDSI------------------------------------------- 289
Query: 123 XXXXXKVKSEAVIEAASLAANG----KPFEVVYYPRASTPEFCVKASLVKAALQIRWCSG 178
++ + SL AN F V Y PRA+ EF + +++ C G
Sbjct: 290 ------IEKNSCSNILSLVANAVSTKSMFHVFYSPRATHAEFVIPYEKYITSIRSPVCIG 343
Query: 179 MRFKMAFETEDSSRISWFMGTISSVQVADPIRWPDSPWRLLQVTWDEPDLLQNVKRVSPW 238
RF+M FE +DS G ++ V DP RWP+S WR L V WDE + + +RVSPW
Sbjct: 344 TRFRMRFEMDDSPE-RRCAGVVTGVCDLDPYRWPNSKWRCLLVRWDESFVSDHQERVSPW 402
Query: 239 LVELVSNMPTIHLSPFSPPRKK 260
++ ++P HLS S PR K
Sbjct: 403 EIDPSVSLP--HLSIQSSPRPK 422
>AT2G33860.1 | Symbols: ETT, ARF3 | ETT (ETTIN); DNA binding /
transcription factor | chr2:14325444-14328613 REVERSE
Length = 608
Score = 154 bits (390), Expect = 9e-38, Method: Compositional matrix adjust.
Identities = 92/239 (38%), Positives = 120/239 (50%), Gaps = 45/239 (18%)
Query: 3 PVQTILAKDVHGETWKFRHIYRGTPRRHLLTTGWSTFVNHKKLVAGDSIVFLRADNGDLC 62
P Q +LA+D+HG W+FRHIYRG PRRHLLTTGWS FVN KKLV+GD+++FLR D+G L
Sbjct: 195 PSQELLARDLHGLEWRFRHIYRGQPRRHLLTTGWSAFVNKKKLVSGDAVLFLRGDDGKLR 254
Query: 63 VGIRRAKRGIGGSPESSWNPAGGNCVMPYGGFTGFLREEDNKIMRXXXXXXXXXXXXXXX 122
+G+RRA + G + S A N M + F+
Sbjct: 255 LGVRRASQIEGTAALS----AQYNQNMNHNNFS--------------------------- 283
Query: 123 XXXXXKVKSEAVIEAASLAANGKPFEVVYYPRASTPEFCVKASLVKAALQIRWCSGMRFK 182
E A + F + Y P+AS F + A + +C GMRFK
Sbjct: 284 -------------EVAHAISTHSVFSISYNPKASWSNFIIPAPKFLKVVDYPFCIGMRFK 330
Query: 183 MAFETEDSSRISWFMGTISSVQVADPIRWPDSPWRLLQVTWDEPDLLQNVKRVSPWLVE 241
E+ED+S G IS + DPIRWP S WR L V WD+ + +RVSPW +E
Sbjct: 331 ARVESEDASE-RRSPGIISGISDLDPIRWPGSKWRCLLVRWDDIVANGHQQRVSPWEIE 388
>AT1G59750.2 | Symbols: ARF1 | ARF1 (AUXIN RESPONSE FACTOR 1); DNA
binding / transcription factor | chr1:21980414-21984193
FORWARD
Length = 662
Score = 152 bits (385), Expect = 3e-37, Method: Compositional matrix adjust.
Identities = 107/292 (36%), Positives = 130/292 (44%), Gaps = 60/292 (20%)
Query: 2 PPVQTILAKDVHGETWKFRHIYRGTPRRHLLTTGWSTFVNHKKLVAGDSIVFLRADNGDL 61
PP Q ++A D+H W FRHI+RG PRRHLLTTGWS FV+ KKLVAGD+ +FLR +N +L
Sbjct: 159 PPWQELVATDLHNSEWHFRHIFRGQPRRHLLTTGWSVFVSSKKLVAGDAFIFLRGENEEL 218
Query: 62 CVGIRRAKRGIGGSPESSWNPAGGNCVMPYGGFTGFLREEDNKIMRXXXXXXXXXXXXXX 121
VG+RR R P S + + G L
Sbjct: 219 RVGVRRHMRQQTNIPSS--------VISSHSMHIGVL----------------------- 247
Query: 122 XXXXXXKVKSEAVIEAASLAANGKPFEVVYYPRASTPEFCVKASLVKAALQIRWCSGMRF 181
AA G F V Y PR S EF V + A + GMRF
Sbjct: 248 -------------ATAAHAITTGTIFSVFYKPRTSRSEFIVSVNRYLEAKTQKLSVGMRF 294
Query: 182 KMAFETEDSSRISWFMGTISSVQVADPIRWPDSPWRLLQVTWDEPDLLQNVKRVSPWLVE 241
KM FE E++ F GTI VQ W DS WR L+V WDEP + +RVSPW +E
Sbjct: 295 KMRFEGEEAPE-KRFSGTIVGVQENKSSVWHDSEWRSLKVQWDEPSSVFRPERVSPWELE 353
Query: 242 -LVSNMPTIHLSPFSPPRKKLRLPQHPDFPLDGQFPIPTFSGNLLGPSSPFG 292
LV+N S P + + PQ P P P GPS P G
Sbjct: 354 PLVAN---------STPSSQPQPPQRNKRPRPPGLPSPA-----TGPSGPDG 391
>AT1G59750.3 | Symbols: ARF1 | ARF1 (AUXIN RESPONSE FACTOR 1); DNA
binding / transcription factor | chr1:21980414-21984193
FORWARD
Length = 665
Score = 152 bits (384), Expect = 4e-37, Method: Compositional matrix adjust.
Identities = 102/270 (37%), Positives = 127/270 (47%), Gaps = 49/270 (18%)
Query: 2 PPVQTILAKDVHGETWKFRHIYRGTPRRHLLTTGWSTFVNHKKLVAGDSIVFLRADNGDL 61
PP Q ++A D+H W FRHI+RG PRRHLLTTGWS FV+ KKLVAGD+ +FLR +N +L
Sbjct: 159 PPWQELVATDLHNSEWHFRHIFRGQPRRHLLTTGWSVFVSSKKLVAGDAFIFLRGENEEL 218
Query: 62 CVGIRRAKRGIGGSPESSWNPAGGNCVMPYGGFTGFLREEDNKIMRXXXXXXXXXXXXXX 121
VG+RR R P S + + G L
Sbjct: 219 RVGVRRHMRQQTNIPSS--------VISSHSMHIGVL----------------------- 247
Query: 122 XXXXXXKVKSEAVIEAASLAANGKPFEVVYYPRASTPEFCVKASLVKAALQIRWCSGMRF 181
AA G F V Y PR S EF V + A + GMRF
Sbjct: 248 -------------ATAAHAITTGTIFSVFYKPRTSRSEFIVSVNRYLEAKTQKLSVGMRF 294
Query: 182 KMAFETEDSSRISWFMGTISSVQVADPIRWPDSPWRLLQVTWDEPDLLQNVKRVSPWLVE 241
KM FE E++ F GTI VQ W DS WR L+V WDEP + +RVSPW +E
Sbjct: 295 KMRFEGEEAPE-KRFSGTIVGVQENKSSVWHDSEWRSLKVQWDEPSSVFRPERVSPWELE 353
Query: 242 -LVSNMPTIHLSPFSPPRKKLRLPQHPDFP 270
LV+N + S PP++ R P+ P P
Sbjct: 354 PLVAN--STPSSQPQPPQRNKR-PRPPGLP 380
>AT1G59750.1 | Symbols: ARF1 | ARF1 (AUXIN RESPONSE FACTOR 1); DNA
binding / transcription factor | chr1:21980414-21984193
FORWARD
Length = 665
Score = 152 bits (384), Expect = 4e-37, Method: Compositional matrix adjust.
Identities = 102/270 (37%), Positives = 127/270 (47%), Gaps = 49/270 (18%)
Query: 2 PPVQTILAKDVHGETWKFRHIYRGTPRRHLLTTGWSTFVNHKKLVAGDSIVFLRADNGDL 61
PP Q ++A D+H W FRHI+RG PRRHLLTTGWS FV+ KKLVAGD+ +FLR +N +L
Sbjct: 159 PPWQELVATDLHNSEWHFRHIFRGQPRRHLLTTGWSVFVSSKKLVAGDAFIFLRGENEEL 218
Query: 62 CVGIRRAKRGIGGSPESSWNPAGGNCVMPYGGFTGFLREEDNKIMRXXXXXXXXXXXXXX 121
VG+RR R P S + + G L
Sbjct: 219 RVGVRRHMRQQTNIPSS--------VISSHSMHIGVL----------------------- 247
Query: 122 XXXXXXKVKSEAVIEAASLAANGKPFEVVYYPRASTPEFCVKASLVKAALQIRWCSGMRF 181
AA G F V Y PR S EF V + A + GMRF
Sbjct: 248 -------------ATAAHAITTGTIFSVFYKPRTSRSEFIVSVNRYLEAKTQKLSVGMRF 294
Query: 182 KMAFETEDSSRISWFMGTISSVQVADPIRWPDSPWRLLQVTWDEPDLLQNVKRVSPWLVE 241
KM FE E++ F GTI VQ W DS WR L+V WDEP + +RVSPW +E
Sbjct: 295 KMRFEGEEAPE-KRFSGTIVGVQENKSSVWHDSEWRSLKVQWDEPSSVFRPERVSPWELE 353
Query: 242 -LVSNMPTIHLSPFSPPRKKLRLPQHPDFP 270
LV+N + S PP++ R P+ P P
Sbjct: 354 PLVAN--STPSSQPQPPQRNKR-PRPPGLP 380
>AT3G61830.1 | Symbols: ARF18 | ARF18 (AUXIN RESPONSE FACTOR 18);
transcription factor | chr3:22888171-22891179 FORWARD
Length = 602
Score = 146 bits (368), Expect = 3e-35, Method: Compositional matrix adjust.
Identities = 98/261 (37%), Positives = 128/261 (49%), Gaps = 59/261 (22%)
Query: 3 PVQTILAKDVHGETWKFRHIYRGTPRRHLLTTGWSTFVNHKKLVAGDSIVFLRADNGDLC 62
P Q ++ +D+HG W+F+HI+RG PRRHLLTTGWSTFV+ K+LVAGD+ VFLR +NGDL
Sbjct: 164 PTQELVTRDLHGFEWRFKHIFRGQPRRHLLTTGWSTFVSSKRLVAGDAFVFLRGENGDLR 223
Query: 63 VGIRRAKRGIGGSPESSWNPAGGNCVMPYGGFTGFLREEDNKIMRXXXXXXXXXXXXXXX 122
VG+RR R P S + +
Sbjct: 224 VGVRRLARHQSTMPTSVISSQSMHL----------------------------------- 248
Query: 123 XXXXXKVKSEAVIEAASLAANGKPFEVVYY-PRASTPEFCVKASLVKAALQIRWCSGMRF 181
V+ AS A VV+Y PR S +F V + A++ + G RF
Sbjct: 249 ----------GVLATASHAVRTTTIFVVFYKPRIS--QFIVGVNKYMEAIKHGFSLGTRF 296
Query: 182 KMAFETEDS-SRISWFMGTISSVQVAD-PIRWPDSPWRLLQVTWDEPDLLQNVKRVSPWL 239
+M FE E+S RI F GTI V D +WP S WR LQV WDEP +Q +VSPW
Sbjct: 297 RMRFEGEESPERI--FTGTI--VGSGDLSSQWPASKWRSLQVQWDEPTTVQRPDKVSPWE 352
Query: 240 VELVSNMPTIHLSPFSPPRKK 260
+E P + SP S P ++
Sbjct: 353 IE-----PFLATSPISTPAQQ 368
>AT1G19220.1 | Symbols: ARF19, IAA22, ARF11 | ARF19 (AUXIN RESPONSE
FACTOR 19); DNA binding / transcription factor |
chr1:6628395-6632779 REVERSE
Length = 1086
Score = 146 bits (368), Expect = 3e-35, Method: Compositional matrix adjust.
Identities = 94/274 (34%), Positives = 125/274 (45%), Gaps = 55/274 (20%)
Query: 2 PPVQTILAKDVHGETWKFRHIYRGTPRRHLLTTGWSTFVNHKKLVAGDSIVFLRADNGDL 61
PP Q I+AKD+H TW FRHIYRG P+RHLLTTGWS FV+ K+L AGDS++
Sbjct: 161 PPAQEIVAKDLHDTTWTFRHIYRGQPKRHLLTTGWSVFVSTKRLFAGDSVL--------- 211
Query: 62 CVGIRRAKRGIGGSPESSWNPAGGNCVMPYGGFTGFLREEDNKIMRXXXXXXXXXXXXXX 121
F+R+E +++M
Sbjct: 212 -----------------------------------FVRDEKSQLMLGIRRANRQTPTLSS 236
Query: 122 XXXXXXKVKSEAVIEAASLAANGKPFEVVYYPRASTPEFCVKASLVKAALQIRWCSGMRF 181
+ + AA AN PF + + PRAS EF V + AL + GMRF
Sbjct: 237 SVISSDSMHIGILAAAAHANANSSPFTIFFNPRASPSEFVVPLAKYNKALYAQVSLGMRF 296
Query: 182 KMAFETEDSSRISWFMGTISSVQVADPIRWPDSPWRLLQVTWDEPDLLQNVKRVSPWLVE 241
+M FETED + +MGT++ + DP+RW S WR LQV WDE RVS W +E
Sbjct: 297 RMMFETEDCG-VRRYMGTVTGISDLDPVRWKGSQWRNLQVGWDESTAGDRPSRVSIWEIE 355
Query: 242 LVSNMPTIHLSPFS---PPRKKLRLPQHPDFPLD 272
V ++PF PP + + P+ P P D
Sbjct: 356 PV-------ITPFYICPPPFFRPKYPRQPGMPDD 382
>AT2G46530.2 | Symbols: ARF11 | ARF11 (AUXIN RESPONSE FACTOR 11);
transcription factor | chr2:19105511-19108029 FORWARD
Length = 514
Score = 145 bits (367), Expect = 4e-35, Method: Compositional matrix adjust.
Identities = 96/257 (37%), Positives = 127/257 (49%), Gaps = 65/257 (25%)
Query: 3 PVQTILAKDVHGETWKFRHIYRGTPRRHLLTTGWSTFVNHKKLVAGDSIVFLRADNGDLC 62
P Q ++A+D+HG W+F+HI+RG PRRHLLTTGWSTFV K+LVAGD+ VFLR + GDL
Sbjct: 73 PTQELVARDLHGYEWRFKHIFRGQPRRHLLTTGWSTFVTSKRLVAGDAFVFLRGETGDLR 132
Query: 63 VGIRRAKRGIGGSPESSWNPAGGNCVMPYGGFTGFLREEDNKIMRXXXXXXXXXXXXXXX 122
VG+RR A MP + ++ MR
Sbjct: 133 VGVRRL--------------AKQQSTMPASVIS-------SQSMRL-------------- 157
Query: 123 XXXXXKVKSEAVIEAASLAANGKPFEVVYY-PRASTPEFCVKASLVKAALQIRWCSGMRF 181
V+ AS A VV+Y PR S +F + + A++ + GMR+
Sbjct: 158 ----------GVLATASHAVTTTTIFVVFYKPRIS--QFIISVNKYMMAMKNGFSLGMRY 205
Query: 182 KMAFETEDS-SRISWFMGTISSVQVAD-PIRWPDSPWRLLQVTWDEPDLLQNVKRVSPWL 239
+M FE E+S RI F GTI + D +WP S WR LQ+ WDEP +Q +VSPW
Sbjct: 206 RMRFEGEESPERI--FTGTI--IGSGDLSSQWPASKWRSLQIQWDEPSSIQRPNKVSPWE 261
Query: 240 VELVSNMPTIHLSPFSP 256
+E PFSP
Sbjct: 262 IE-----------PFSP 267
>AT2G46530.1 | Symbols: ARF11 | ARF11 (AUXIN RESPONSE FACTOR 11);
transcription factor | chr2:19104993-19108029 FORWARD
Length = 601
Score = 145 bits (366), Expect = 5e-35, Method: Compositional matrix adjust.
Identities = 96/257 (37%), Positives = 127/257 (49%), Gaps = 65/257 (25%)
Query: 3 PVQTILAKDVHGETWKFRHIYRGTPRRHLLTTGWSTFVNHKKLVAGDSIVFLRADNGDLC 62
P Q ++A+D+HG W+F+HI+RG PRRHLLTTGWSTFV K+LVAGD+ VFLR + GDL
Sbjct: 160 PTQELVARDLHGYEWRFKHIFRGQPRRHLLTTGWSTFVTSKRLVAGDAFVFLRGETGDLR 219
Query: 63 VGIRRAKRGIGGSPESSWNPAGGNCVMPYGGFTGFLREEDNKIMRXXXXXXXXXXXXXXX 122
VG+RR A MP + ++ MR
Sbjct: 220 VGVRRL--------------AKQQSTMPASVIS-------SQSMRL-------------- 244
Query: 123 XXXXXKVKSEAVIEAASLAANGKPFEVVYY-PRASTPEFCVKASLVKAALQIRWCSGMRF 181
V+ AS A VV+Y PR S +F + + A++ + GMR+
Sbjct: 245 ----------GVLATASHAVTTTTIFVVFYKPRIS--QFIISVNKYMMAMKNGFSLGMRY 292
Query: 182 KMAFETEDS-SRISWFMGTISSVQVAD-PIRWPDSPWRLLQVTWDEPDLLQNVKRVSPWL 239
+M FE E+S RI F GTI + D +WP S WR LQ+ WDEP +Q +VSPW
Sbjct: 293 RMRFEGEESPERI--FTGTI--IGSGDLSSQWPASKWRSLQIQWDEPSSIQRPNKVSPWE 348
Query: 240 VELVSNMPTIHLSPFSP 256
+E PFSP
Sbjct: 349 IE-----------PFSP 354
>AT2G46530.3 | Symbols: ARF11 | ARF11 (AUXIN RESPONSE FACTOR 11);
transcription factor | chr2:19105112-19108029 FORWARD
Length = 622
Score = 145 bits (365), Expect = 6e-35, Method: Compositional matrix adjust.
Identities = 96/257 (37%), Positives = 127/257 (49%), Gaps = 65/257 (25%)
Query: 3 PVQTILAKDVHGETWKFRHIYRGTPRRHLLTTGWSTFVNHKKLVAGDSIVFLRADNGDLC 62
P Q ++A+D+HG W+F+HI+RG PRRHLLTTGWSTFV K+LVAGD+ VFLR + GDL
Sbjct: 181 PTQELVARDLHGYEWRFKHIFRGQPRRHLLTTGWSTFVTSKRLVAGDAFVFLRGETGDLR 240
Query: 63 VGIRRAKRGIGGSPESSWNPAGGNCVMPYGGFTGFLREEDNKIMRXXXXXXXXXXXXXXX 122
VG+RR A MP + ++ MR
Sbjct: 241 VGVRRL--------------AKQQSTMPASVIS-------SQSMRL-------------- 265
Query: 123 XXXXXKVKSEAVIEAASLAANGKPFEVVYY-PRASTPEFCVKASLVKAALQIRWCSGMRF 181
V+ AS A VV+Y PR S +F + + A++ + GMR+
Sbjct: 266 ----------GVLATASHAVTTTTIFVVFYKPRIS--QFIISVNKYMMAMKNGFSLGMRY 313
Query: 182 KMAFETEDS-SRISWFMGTISSVQVAD-PIRWPDSPWRLLQVTWDEPDLLQNVKRVSPWL 239
+M FE E+S RI F GTI + D +WP S WR LQ+ WDEP +Q +VSPW
Sbjct: 314 RMRFEGEESPERI--FTGTI--IGSGDLSSQWPASKWRSLQIQWDEPSSIQRPNKVSPWE 369
Query: 240 VELVSNMPTIHLSPFSP 256
+E PFSP
Sbjct: 370 IE-----------PFSP 375
>AT5G37020.1 | Symbols: ARF8, ATARF8 | ARF8 (AUXIN RESPONSE FACTOR
8); transcription factor | chr5:14630151-14634106
FORWARD
Length = 811
Score = 144 bits (363), Expect = 1e-34, Method: Compositional matrix adjust.
Identities = 84/247 (34%), Positives = 119/247 (48%), Gaps = 46/247 (18%)
Query: 2 PPVQTILAKDVHGETWKFRHIYRGTPRRHLLTTGWSTFVNHKKLVAGDSIVFLRADNGDL 61
PP Q ++A+D+H WKFRHI+RG P+RHLLTTGWS FV+ K+LVAGDS++
Sbjct: 161 PPAQELIARDLHDVEWKFRHIFRGQPKRHLLTTGWSVFVSAKRLVAGDSVI--------- 211
Query: 62 CVGIRRAKRGIGGSPESSWNPAGGNCVMPYGGFTGFLREEDNKIMRXXXXXXXXXXXXXX 121
F+R E N++
Sbjct: 212 -----------------------------------FIRNEKNQLFLGIRHATRPQTIVPS 236
Query: 122 XXXXXXKVKSEAVIEAASLAANGKPFEVVYYPRASTPEFCVKAS-LVKAALQIRWCSGMR 180
+ + AA +A F V ++PRAS EF ++ S +KA R GMR
Sbjct: 237 SVLSSDSMHIGLLAAAAHASATNSCFTVFFHPRASQSEFVIQLSKYIKAVFHTRISVGMR 296
Query: 181 FKMAFETEDSSRISWFMGTISSVQVADPIRWPDSPWRLLQVTWDEPDLLQNVKRVSPWLV 240
F+M FETE+SS + +MGTI+ + D +RWP+S WR ++V WDE + RVS W +
Sbjct: 297 FRMLFETEESS-VRRYMGTITGISDLDSVRWPNSHWRSVKVGWDESTAGERQPRVSLWEI 355
Query: 241 ELVSNMP 247
E ++ P
Sbjct: 356 EPLTTFP 362
>AT5G37020.2 | Symbols: ARF8 | ARF8 (AUXIN RESPONSE FACTOR 8);
transcription factor | chr5:14630151-14633916 FORWARD
Length = 773
Score = 144 bits (363), Expect = 1e-34, Method: Compositional matrix adjust.
Identities = 84/247 (34%), Positives = 119/247 (48%), Gaps = 46/247 (18%)
Query: 2 PPVQTILAKDVHGETWKFRHIYRGTPRRHLLTTGWSTFVNHKKLVAGDSIVFLRADNGDL 61
PP Q ++A+D+H WKFRHI+RG P+RHLLTTGWS FV+ K+LVAGDS++
Sbjct: 161 PPAQELIARDLHDVEWKFRHIFRGQPKRHLLTTGWSVFVSAKRLVAGDSVI--------- 211
Query: 62 CVGIRRAKRGIGGSPESSWNPAGGNCVMPYGGFTGFLREEDNKIMRXXXXXXXXXXXXXX 121
F+R E N++
Sbjct: 212 -----------------------------------FIRNEKNQLFLGIRHATRPQTIVPS 236
Query: 122 XXXXXXKVKSEAVIEAASLAANGKPFEVVYYPRASTPEFCVKAS-LVKAALQIRWCSGMR 180
+ + AA +A F V ++PRAS EF ++ S +KA R GMR
Sbjct: 237 SVLSSDSMHIGLLAAAAHASATNSCFTVFFHPRASQSEFVIQLSKYIKAVFHTRISVGMR 296
Query: 181 FKMAFETEDSSRISWFMGTISSVQVADPIRWPDSPWRLLQVTWDEPDLLQNVKRVSPWLV 240
F+M FETE+SS + +MGTI+ + D +RWP+S WR ++V WDE + RVS W +
Sbjct: 297 FRMLFETEESS-VRRYMGTITGISDLDSVRWPNSHWRSVKVGWDESTAGERQPRVSLWEI 355
Query: 241 ELVSNMP 247
E ++ P
Sbjct: 356 EPLTTFP 362
>AT1G19850.1 | Symbols: MP, ARF5, IAA24 | MP (MONOPTEROS);
transcription factor | chr1:6887353-6891182 FORWARD
Length = 902
Score = 144 bits (362), Expect = 2e-34, Method: Compositional matrix adjust.
Identities = 87/241 (36%), Positives = 110/241 (45%), Gaps = 46/241 (19%)
Query: 2 PPVQTILAKDVHGETWKFRHIYRGTPRRHLLTTGWSTFVNHKKLVAGDSIVFLRADNGDL 61
PP Q ++ +D+H TW FRHIYRG P+RHLLTTGWS FV K+L AGDS++F
Sbjct: 193 PPTQELVVRDLHENTWTFRHIYRGQPKRHLLTTGWSLFVGSKRLRAGDSVLF-------- 244
Query: 62 CVGIRRAKRGIGGSPESSWNPAGGNCVMPYGGFTGFLREEDNKIMRXXXXXXXXXXXXXX 121
+R+E +++M
Sbjct: 245 ------------------------------------IRDEKSQLMVGVRRANRQQTALPS 268
Query: 122 XXXXXXKVKSEAVIEAASLAANGKPFEVVYYPRASTPEFCVK-ASLVKAALQIRWCSGMR 180
+ + AA AN PF + Y PRA EF + A KA + GMR
Sbjct: 269 SVLSADSMHIGVLAAAAHATANRTPFLIFYNPRACPAEFVIPLAKYRKAICGSQLSVGMR 328
Query: 181 FKMAFETEDSSRISWFMGTISSVQVADPIRWPDSPWRLLQVTWDEPDLLQNVKRVSPWLV 240
F M FETEDS + +MGTI + DP+RWP S WR LQV WDEP RVSPW +
Sbjct: 329 FGMMFETEDSGK-RRYMGTIVGISDLDPLRWPGSKWRNLQVEWDEPGCNDKPTRVSPWDI 387
Query: 241 E 241
E
Sbjct: 388 E 388
>AT1G35520.1 | Symbols: ARF15 | ARF15 (AUXIN RESPONSE FACTOR 15);
transcription factor | chr1:13082819-13085830 REVERSE
Length = 598
Score = 137 bits (344), Expect = 2e-32, Method: Compositional matrix adjust.
Identities = 98/267 (36%), Positives = 125/267 (46%), Gaps = 51/267 (19%)
Query: 3 PVQTILAKDVHGETWKFRHIYRGTPRRHLLTTGWSTFVNHKKLVAGDSIVFLRADNGDLC 62
P Q +LA D+HG W FRH YRGTP+RHLLTTGW+ F KKLV GD IVF+R + G+L
Sbjct: 167 PAQELLAIDLHGNQWSFRHSYRGTPQRHLLTTGWNEFTTSKKLVKGDVIVFVRGETGELR 226
Query: 63 VGIRRAKRGIGGSPESSWNPAGGNCVMPYGGFTGFLREEDNKIMRXXXXXXXXXXXXXXX 122
VGIRRA+ G P S +C M +G DN+ M
Sbjct: 227 VGIRRARHQQGNIPSSI---VSIDC-MRHGVIASAKHAFDNQCM---------------- 266
Query: 123 XXXXXKVKSEAVIEAASLAANGKPFEVVYYPRASTPEFCVKASLVKAALQIRWCSGMRFK 182
F VVY PR+S +F V A+ ++ G RF
Sbjct: 267 ------------------------FIVVYKPRSS--QFIVSYDKFLDAVNNKFNVGSRFT 300
Query: 183 MAFETEDSSRISWFMGTISSVQVADPIRWPDSPWRLLQVTWDEPDLLQNVKRVSPWLVEL 242
M FE +D S +F GTI V P W S WR L+V WDE +VSPW +E
Sbjct: 301 MRFEGDDLSERRYF-GTIIGVSNFSP-HWKCSDWRSLEVQWDEFASFLRPNKVSPWEIEH 358
Query: 243 VSNMPTIHLSPFSPPRKKLRLPQHPDF 269
+ MP +++ P S K RL + +F
Sbjct: 359 L--MPALNV-PRSSFLKNKRLREVNEF 382
>AT1G35240.1 | Symbols: ARF20 | ARF20 (AUXIN RESPONSE FACTOR 20);
transcription factor | chr1:12927457-12930523 REVERSE
Length = 590
Score = 135 bits (341), Expect = 4e-32, Method: Compositional matrix adjust.
Identities = 87/239 (36%), Positives = 110/239 (46%), Gaps = 46/239 (19%)
Query: 3 PVQTILAKDVHGETWKFRHIYRGTPRRHLLTTGWSTFVNHKKLVAGDSIVFLRADNGDLC 62
P Q +LAKD+HG W+FRH YRGTP+RH LTTGW+ F KKLV GD IVF+R + G+L
Sbjct: 158 PAQELLAKDLHGNQWRFRHSYRGTPQRHSLTTGWNEFTTSKKLVKGDVIVFVRGETGELR 217
Query: 63 VGIRRAKRGIGGSPESSWNPAGGNCVMPYGGFTGFLREEDNKIMRXXXXXXXXXXXXXXX 122
VGIRRA+ G P S +C M +G DN+ +
Sbjct: 218 VGIRRARHQQGNIPSS---IVSIDC-MRHGVIASAKHALDNQCI---------------- 257
Query: 123 XXXXXKVKSEAVIEAASLAANGKPFEVVYYPRASTPEFCVKASLVKAALQIRWCSGMRFK 182
F VVY P + +F V A+ ++ G RF
Sbjct: 258 ------------------------FIVVYKPSIRSSQFIVSYDKFLDAMNNKFIVGSRFT 293
Query: 183 MAFETEDSSRISWFMGTISSVQVADPIRWPDSPWRLLQVTWDEPDLLQNVKRVSPWLVE 241
M FE +D S +F GTI V P W S WR L+V WDE +VSPW +E
Sbjct: 294 MRFEGDDFSERRYF-GTIIGVNDFSP-HWKCSEWRSLEVQWDEFASFSRPNKVSPWEIE 350
>AT1G34310.1 | Symbols: ARF12 | ARF12 (AUXIN RESPONSE FACTOR 12);
transcription factor | chr1:12508548-12511520 REVERSE
Length = 593
Score = 135 bits (340), Expect = 5e-32, Method: Compositional matrix adjust.
Identities = 97/261 (37%), Positives = 122/261 (46%), Gaps = 51/261 (19%)
Query: 3 PVQTILAKDVHGETWKFRHIYRGTPRRHLLTTGWSTFVNHKKLVAGDSIVFLRADNGDLC 62
P Q +LA D+HG W+F H YRGTP+RHLLTTGW+ F KKLVAGD IVF+R + G+L
Sbjct: 162 PAQELLAIDLHGNQWRFNHNYRGTPQRHLLTTGWNAFTTSKKLVAGDVIVFVRGETGELR 221
Query: 63 VGIRRAKRGIGGSPESSWNPAGGNCVMPYGGFTGFLREEDNKIMRXXXXXXXXXXXXXXX 122
VGIRRA+ G P S +C M +G DN+ M
Sbjct: 222 VGIRRARHQQGNIPSSI---VSIDC-MRHGVVASAKHAFDNQCM---------------- 261
Query: 123 XXXXXKVKSEAVIEAASLAANGKPFEVVYYPRASTPEFCVKASLVKAALQIRWCSGMRFK 182
F VVY PR+S +F V A+ ++ G RF
Sbjct: 262 ------------------------FTVVYKPRSS--KFIVSYDKFLDAVNNKFNVGSRFT 295
Query: 183 MAFETEDSSRISWFMGTISSVQVADPIRWPDSPWRLLQVTWDEPDLLQNVKRVSPWLVEL 242
M E +D S F GTI V P W S WR L+V WDE K+VSPW +E
Sbjct: 296 MRLEGDDFSERRCF-GTIIGVSDFSP-HWKCSEWRSLEVQWDEFTSFPGPKKVSPWDIEH 353
Query: 243 VSNMPTIHL-SPFSPPRKKLR 262
+ MP I++ F K+LR
Sbjct: 354 L--MPAINVPRSFLLKNKRLR 372
>AT1G34410.1 | Symbols: ARF21 | ARF21 (AUXIN RESPONSE FACTOR 21);
transcription factor | chr1:12577722-12580824 FORWARD
Length = 606
Score = 132 bits (333), Expect = 4e-31, Method: Compositional matrix adjust.
Identities = 95/267 (35%), Positives = 125/267 (46%), Gaps = 51/267 (19%)
Query: 3 PVQTILAKDVHGETWKFRHIYRGTPRRHLLTTGWSTFVNHKKLVAGDSIVFLRADNGDLC 62
P Q ILA D+H W+FRH YRGTP+RH LTTGW+ F+ KKLV GD IVF+R + G+L
Sbjct: 162 PAQEILAIDLHDNQWRFRHNYRGTPQRHSLTTGWNEFITSKKLVKGDVIVFVRGETGELR 221
Query: 63 VGIRRAKRGIGGSPESSWNPAGGNCVMPYGGFTGFLREEDNKIMRXXXXXXXXXXXXXXX 122
VGIRRA+ G P S +C M +G DN+ +
Sbjct: 222 VGIRRARHQQGNIPSSI---VSIDC-MRHGVIASAKHAFDNQCI---------------- 261
Query: 123 XXXXXKVKSEAVIEAASLAANGKPFEVVYYPRASTPEFCVKASLVKAALQIRWCSGMRFK 182
F VVY PR+S +F V A+ ++ G RF
Sbjct: 262 ------------------------FIVVYKPRSS--QFIVSYDKFLDAVNNKFNVGSRFT 295
Query: 183 MAFETEDSSRISWFMGTISSVQVADPIRWPDSPWRLLQVTWDEPDLLQNVKRVSPWLVEL 242
M FE +D S +F GTI V P W S WR L+V WDE +VSPW +E
Sbjct: 296 MRFEGDDFSERRYF-GTIIGVSDFSP-HWKCSEWRSLEVQWDEFASFSRPNKVSPWEIEH 353
Query: 243 VSNMPTIHLSPFSPPRKKLRLPQHPDF 269
+ +P +++ P S K RL + +F
Sbjct: 354 L--VPALNV-PRSSLLKNKRLREVNEF 377
>AT1G34390.1 | Symbols: ARF22 | ARF22 (AUXIN RESPONSE FACTOR 22);
transcription factor | chr1:12556005-12559082 FORWARD
Length = 598
Score = 131 bits (329), Expect = 9e-31, Method: Compositional matrix adjust.
Identities = 95/261 (36%), Positives = 121/261 (46%), Gaps = 51/261 (19%)
Query: 3 PVQTILAKDVHGETWKFRHIYRGTPRRHLLTTGWSTFVNHKKLVAGDSIVFLRADNGDLC 62
P Q +LA D+HG W+F H YRGTP+RHLLTTGW+ F KKLVAGD IVF+R + G+L
Sbjct: 160 PTQELLATDLHGNQWRFNHNYRGTPQRHLLTTGWNAFTTSKKLVAGDVIVFVRGETGELR 219
Query: 63 VGIRRAKRGIGGSPESSWNPAGGNCVMPYGGFTGFLREEDNKIMRXXXXXXXXXXXXXXX 122
VGIRRA G P S + M +G DN+ M
Sbjct: 220 VGIRRAGHQQGNIPSSIISIE----SMRHGVIASAKHAFDNQCM---------------- 259
Query: 123 XXXXXKVKSEAVIEAASLAANGKPFEVVYYPRASTPEFCVKASLVKAALQIRWCSGMRFK 182
F VVY PR+S +F V A+ ++ G RF
Sbjct: 260 ------------------------FIVVYKPRSS--QFIVSYDKFLDAVNNKFNVGSRFT 293
Query: 183 MAFETEDSSRISWFMGTISSVQVADPIRWPDSPWRLLQVTWDEPDLLQNVKRVSPWLVEL 242
M FE +D S +F GTI V P W S WR L+V WDE +VSPW +E
Sbjct: 294 MRFEGDDFSERRYF-GTIIGVSDFSP-HWKCSEWRNLEVQWDEFASFSRPNKVSPWEIEH 351
Query: 243 VSNMPTIHL-SPFSPPRKKLR 262
+ MP +++ P K+LR
Sbjct: 352 L--MPALNVPRPSLLKNKRLR 370
>AT1G35540.1 | Symbols: ARF14 | ARF14 (AUXIN RESPONSE FACTOR 14);
transcription factor | chr1:13108634-13111700 FORWARD
Length = 605
Score = 129 bits (325), Expect = 3e-30, Method: Compositional matrix adjust.
Identities = 92/253 (36%), Positives = 113/253 (44%), Gaps = 56/253 (22%)
Query: 3 PVQTILAKDVHGETWKFRHIYRGTPRRHLLTTGWSTFVNHKKLVAGDSIVFLRADNGDLC 62
P Q ILA D+HG W+FRHIYRGT +RHLLT GW+ F KKLV GD IVF+R + G+L
Sbjct: 162 PTQEILAIDLHGNQWRFRHIYRGTAQRHLLTIGWNAFTTSKKLVEGDVIVFVRGETGELR 221
Query: 63 VGIRRAKRGIGGSPESSWNPAGGNCVMPYGGFTGFLREEDNKIMRXXXXXXXXXXXXXXX 122
VGIRRA G P S + M +G DN+ M
Sbjct: 222 VGIRRAGHQQGNIPSSIVSIES----MRHGIIASAKHAFDNQCM---------------- 261
Query: 123 XXXXXKVKSEAVIEAASLAANGKPFEVVYYPRASTPEFCVKASLVKAALQIRWCSGMRFK 182
F VVY PR+S +F V + ++ G RF
Sbjct: 262 ------------------------FIVVYKPRSS--QFIVSYDKFLDVVNNKFNVGSRFT 295
Query: 183 MAFETEDSSRISWFMGTISSVQVADPIRWPDSPWRLLQVTWDEPDLLQNVKRVSPWLVEL 242
M FE +D S F GTI V P W S WR L+V WDE +VSPW +E
Sbjct: 296 MRFEGDDFSERRSF-GTIIGVSDFSP-HWKCSEWRSLEVQWDEFASFPRPNQVSPWDIE- 352
Query: 243 VSNMPTIHLSPFS 255
HL+P+S
Sbjct: 353 -------HLTPWS 358
>AT1G34170.1 | Symbols: ARF13 | transcription factor |
chr1:12444265-12446764 REVERSE
Length = 505
Score = 125 bits (315), Expect = 4e-29, Method: Compositional matrix adjust.
Identities = 85/258 (32%), Positives = 118/258 (45%), Gaps = 52/258 (20%)
Query: 5 QTILAKDVHGETWKFRHIYRGTPRRHLLTT--GWSTFVNHKKLVAGDSIVFLRADNGDLC 62
Q ++AKD++G+ W F+H++RGTP+RH+ T+ GWS F K+L+ GD V LR +NG+L
Sbjct: 162 QNLVAKDLYGQEWSFKHVFRGTPQRHMFTSGGGWSVFATTKRLIVGDIFVLLRGENGELR 221
Query: 63 VGIRRAKRGIGGSPESSWNPAGGNCVMPYGGFTGFLREEDNKIMRXXXXXXXXXXXXXXX 122
GIRRAK G P S NC M +G + K M
Sbjct: 222 FGIRRAKHQQGHIPSSV---ISANC-MQHGVIASVVNAFKTKCM---------------- 261
Query: 123 XXXXXKVKSEAVIEAASLAANGKPFEVVYYPRASTPEFCVKASLVKAALQIRWCSGMRFK 182
F VVY P S+ +F + A+ + G RF+
Sbjct: 262 ------------------------FNVVYKP--SSSQFVISYDKFVDAMNNNYIVGSRFR 295
Query: 183 MAFETEDSSRISWFMGTISSVQVADPIRWPDSPWRLLQVTWDEPDLLQNVKRVSPWLVEL 242
M FE +D S + GTI V P W DS WR L+V WDE +VSPW +E
Sbjct: 296 MQFEGKDFSE-KRYDGTIIGVNDMSP-HWKDSEWRSLKVQWDELSPFLRPNQVSPWDIEH 353
Query: 243 VSNMPTIHLSPFSPPRKK 260
+ +P+ +S S +KK
Sbjct: 354 L--IPSSDISQSSLKKKK 369
>AT4G23980.2 | Symbols: ARF9 | ARF9 (AUXIN RESPONSE FACTOR 9);
transcription factor | chr4:12451592-12454737 FORWARD
Length = 636
Score = 120 bits (300), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 82/247 (33%), Positives = 109/247 (44%), Gaps = 48/247 (19%)
Query: 3 PVQTILAKDVHGETWKFRHIYRGTPRRHLLTTGWSTFVNHKKLVAGDSIVFLRADNGDLC 62
P Q ++A+DVHG WKF+HI+RG PRRHLLTTGWSTFV K+LVA GD
Sbjct: 152 PTQELVAEDVHGYQWKFKHIFRGQPRRHLLTTGWSTFVTSKRLVA-----------GDTF 200
Query: 63 VGIRRAKRGIGGSPESSWNPAGGNCVMPYGGFTGFLREEDNKIMRXXXXXXXXXXXXXXX 122
V +R G N + G L++
Sbjct: 201 VFLR-----------------GENGELRVGVRRANLQQSSMPSSVISSHSMHL------- 236
Query: 123 XXXXXKVKSEAVIEAASLAANGKPFEVVYYPRASTPEFCVKASLVKAALQIRWCSGMRFK 182
V+ A A K +VYY + T +F + + A+ ++ GMRFK
Sbjct: 237 ----------GVLATARHATQTKTMFIVYY-KPRTSQFIISLNKYLEAMSNKFSVGMRFK 285
Query: 183 MAFETEDSSRISWFMGTISSVQVADPIRWPDSPWRLLQVTWDEPDLLQNVKRVSPWLVEL 242
M FE EDS + GT+ V+ P W DS WR L+V WDEP + +VSPW +E
Sbjct: 286 MRFEGEDSPERR-YSGTVIGVKDCSP-HWKDSKWRCLEVHWDEPASISRPNKVSPWEIEP 343
Query: 243 VSNMPTI 249
N +
Sbjct: 344 FVNSENV 350
>AT4G23980.1 | Symbols: ARF9 | ARF9 (AUXIN RESPONSE FACTOR 9);
transcription factor | chr4:12451592-12454737 FORWARD
Length = 638
Score = 120 bits (300), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 82/247 (33%), Positives = 109/247 (44%), Gaps = 48/247 (19%)
Query: 3 PVQTILAKDVHGETWKFRHIYRGTPRRHLLTTGWSTFVNHKKLVAGDSIVFLRADNGDLC 62
P Q ++A+DVHG WKF+HI+RG PRRHLLTTGWSTFV K+LVA GD
Sbjct: 152 PTQELVAEDVHGYQWKFKHIFRGQPRRHLLTTGWSTFVTSKRLVA-----------GDTF 200
Query: 63 VGIRRAKRGIGGSPESSWNPAGGNCVMPYGGFTGFLREEDNKIMRXXXXXXXXXXXXXXX 122
V +R G N + G L++
Sbjct: 201 VFLR-----------------GENGELRVGVRRANLQQSSMPSSVISSHSMHL------- 236
Query: 123 XXXXXKVKSEAVIEAASLAANGKPFEVVYYPRASTPEFCVKASLVKAALQIRWCSGMRFK 182
V+ A A K +VYY + T +F + + A+ ++ GMRFK
Sbjct: 237 ----------GVLATARHATQTKTMFIVYY-KPRTSQFIISLNKYLEAMSNKFSVGMRFK 285
Query: 183 MAFETEDSSRISWFMGTISSVQVADPIRWPDSPWRLLQVTWDEPDLLQNVKRVSPWLVEL 242
M FE EDS + GT+ V+ P W DS WR L+V WDEP + +VSPW +E
Sbjct: 286 MRFEGEDSPERR-YSGTVIGVKDCSP-HWKDSKWRCLEVHWDEPASISRPNKVSPWEIEP 343
Query: 243 VSNMPTI 249
N +
Sbjct: 344 FVNSENV 350
>AT1G34170.2 | Symbols: ARF13 | transcription factor |
chr1:12444265-12446764 REVERSE
Length = 479
Score = 107 bits (266), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 80/258 (31%), Positives = 107/258 (41%), Gaps = 78/258 (30%)
Query: 5 QTILAKDVHGETWKFRHIYRGTPRRHLLTT--GWSTFVNHKKLVAGDSIVFLRADNGDLC 62
Q ++AKD++G+ W F+H++RGTP+RH+ T+ GWS F K+L+ GD V LR +NG+L
Sbjct: 162 QNLVAKDLYGQEWSFKHVFRGTPQRHMFTSGGGWSVFATTKRLIVGDIFVLLRGENGELR 221
Query: 63 VGIRRAKRGIGGSPESSWNPAGGNCVMPYGGFTGFLREEDNKIMRXXXXXXXXXXXXXXX 122
GIRRAK G P S NC M +G + K M
Sbjct: 222 FGIRRAKHQQGHIPSSV---ISANC-MQHGVIASVVNAFKTKCM---------------- 261
Query: 123 XXXXXKVKSEAVIEAASLAANGKPFEVVYYPRASTPEFCVKASLVKAALQIRWCSGMRFK 182
F VVY PR
Sbjct: 262 ------------------------FNVVYKPR---------------------------- 269
Query: 183 MAFETEDSSRISWFMGTISSVQVADPIRWPDSPWRLLQVTWDEPDLLQNVKRVSPWLVEL 242
M FE +D S + GTI V P W DS WR L+V WDE +VSPW +E
Sbjct: 270 MQFEGKDFSE-KRYDGTIIGVNDMSP-HWKDSEWRSLKVQWDELSPFLRPNQVSPWDIEH 327
Query: 243 VSNMPTIHLSPFSPPRKK 260
+ +P+ +S S +KK
Sbjct: 328 L--IPSSDISQSSLKKKK 343
>AT1G34170.3 | Symbols: | transcription factor |
chr1:12443578-12446764 REVERSE
Length = 546
Score = 106 bits (264), Expect = 3e-23, Method: Compositional matrix adjust.
Identities = 80/258 (31%), Positives = 107/258 (41%), Gaps = 78/258 (30%)
Query: 5 QTILAKDVHGETWKFRHIYRGTPRRHLLTT--GWSTFVNHKKLVAGDSIVFLRADNGDLC 62
Q ++AKD++G+ W F+H++RGTP+RH+ T+ GWS F K+L+ GD V LR +NG+L
Sbjct: 162 QNLVAKDLYGQEWSFKHVFRGTPQRHMFTSGGGWSVFATTKRLIVGDIFVLLRGENGELR 221
Query: 63 VGIRRAKRGIGGSPESSWNPAGGNCVMPYGGFTGFLREEDNKIMRXXXXXXXXXXXXXXX 122
GIRRAK G P S NC M +G + K M
Sbjct: 222 FGIRRAKHQQGHIPSSV---ISANC-MQHGVIASVVNAFKTKCM---------------- 261
Query: 123 XXXXXKVKSEAVIEAASLAANGKPFEVVYYPRASTPEFCVKASLVKAALQIRWCSGMRFK 182
F VVY PR
Sbjct: 262 ------------------------FNVVYKPR---------------------------- 269
Query: 183 MAFETEDSSRISWFMGTISSVQVADPIRWPDSPWRLLQVTWDEPDLLQNVKRVSPWLVEL 242
M FE +D S + GTI V P W DS WR L+V WDE +VSPW +E
Sbjct: 270 MQFEGKDFSE-KRYDGTIIGVNDMSP-HWKDSEWRSLKVQWDELSPFLRPNQVSPWDIEH 327
Query: 243 VSNMPTIHLSPFSPPRKK 260
+ +P+ +S S +KK
Sbjct: 328 L--IPSSDISQSSLKKKK 343
>AT5G20730.3 | Symbols: NPH4, MSG1, IAA21, ARF7, TIR5, BIP, IAA23,
IAA25 | NPH4 (NON-PHOTOTROPHIC HYPOCOTYL); DNA binding /
transcription activator/ transcription factor/
transcription regulator | chr5:7016704-7021504 REVERSE
Length = 1150
Score = 103 bits (257), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 43/69 (62%), Positives = 53/69 (76%)
Query: 2 PPVQTILAKDVHGETWKFRHIYRGTPRRHLLTTGWSTFVNHKKLVAGDSIVFLRADNGDL 61
PP Q ++AKD+H TW FRHIYRG P+RHLLTTGWS FV+ K+L AGDS++F+R L
Sbjct: 162 PPCQELVAKDIHDNTWTFRHIYRGQPKRHLLTTGWSVFVSTKRLFAGDSVLFIRDGKAQL 221
Query: 62 CVGIRRAKR 70
+GIRRA R
Sbjct: 222 LLGIRRANR 230
Score = 82.4 bits (202), Expect = 6e-16, Method: Compositional matrix adjust.
Identities = 49/131 (37%), Positives = 67/131 (51%), Gaps = 12/131 (9%)
Query: 146 PFEVVYYPRASTP-EFCVKASLVKAALQIRWCSGMRFKMAFETEDSSRISWFMGTISSVQ 204
PF + Y PR + P EF V + A+ + GMRF+M FETE+ + +MGT++ +
Sbjct: 262 PFTIFYNPRWAAPAEFVVPLAKYTKAMYAQVSLGMRFRMIFETEECG-VRRYMGTVTGIS 320
Query: 205 VADPIRWPDSPWRLLQVTWDEPDLLQNVKRVSPWLVELVSNMPTIHLSPFS---PPRKKL 261
DP+RW +S WR LQ+ WDE RVS W +E V L+PF PP +
Sbjct: 321 DLDPVRWKNSQWRNLQIGWDESAAGDRPSRVSVWDIEPV-------LTPFYICPPPFFRP 373
Query: 262 RLPQHPDFPLD 272
R P P D
Sbjct: 374 RFSGQPGMPDD 384
>AT5G20730.2 | Symbols: NPH4, MSG1, IAA21, ARF7, TIR5, BIP | NPH4
(NON-PHOTOTROPHIC HYPOCOTYL); DNA binding /
transcription activator/ transcription factor/
transcription regulator | chr5:7016704-7021504 REVERSE
Length = 1164
Score = 103 bits (257), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 43/69 (62%), Positives = 53/69 (76%)
Query: 2 PPVQTILAKDVHGETWKFRHIYRGTPRRHLLTTGWSTFVNHKKLVAGDSIVFLRADNGDL 61
PP Q ++AKD+H TW FRHIYRG P+RHLLTTGWS FV+ K+L AGDS++F+R L
Sbjct: 162 PPCQELVAKDIHDNTWTFRHIYRGQPKRHLLTTGWSVFVSTKRLFAGDSVLFIRDGKAQL 221
Query: 62 CVGIRRAKR 70
+GIRRA R
Sbjct: 222 LLGIRRANR 230
Score = 86.7 bits (213), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 49/130 (37%), Positives = 67/130 (51%), Gaps = 11/130 (8%)
Query: 146 PFEVVYYPRASTPEFCVKASLVKAALQIRWCSGMRFKMAFETEDSSRISWFMGTISSVQV 205
PF + Y PRA+ EF V + A+ + GMRF+M FETE+ + +MGT++ +
Sbjct: 262 PFTIFYNPRAAPAEFVVPLAKYTKAMYAQVSLGMRFRMIFETEECG-VRRYMGTVTGISD 320
Query: 206 ADPIRWPDSPWRLLQVTWDEPDLLQNVKRVSPWLVELVSNMPTIHLSPFS---PPRKKLR 262
DP+RW +S WR LQ+ WDE RVS W +E V L+PF PP + R
Sbjct: 321 LDPVRWKNSQWRNLQIGWDESAAGDRPSRVSVWDIEPV-------LTPFYICPPPFFRPR 373
Query: 263 LPQHPDFPLD 272
P P D
Sbjct: 374 FSGQPGMPDD 383
>AT5G20730.1 | Symbols: NPH4, MSG1, IAA21, ARF7, TIR5, BIP | NPH4
(NON-PHOTOTROPHIC HYPOCOTYL); DNA binding /
transcription activator/ transcription factor/
transcription regulator | chr5:7016704-7021504 REVERSE
Length = 1165
Score = 103 bits (257), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 43/69 (62%), Positives = 53/69 (76%)
Query: 2 PPVQTILAKDVHGETWKFRHIYRGTPRRHLLTTGWSTFVNHKKLVAGDSIVFLRADNGDL 61
PP Q ++AKD+H TW FRHIYRG P+RHLLTTGWS FV+ K+L AGDS++F+R L
Sbjct: 162 PPCQELVAKDIHDNTWTFRHIYRGQPKRHLLTTGWSVFVSTKRLFAGDSVLFIRDGKAQL 221
Query: 62 CVGIRRAKR 70
+GIRRA R
Sbjct: 222 LLGIRRANR 230
Score = 82.4 bits (202), Expect = 5e-16, Method: Compositional matrix adjust.
Identities = 49/131 (37%), Positives = 67/131 (51%), Gaps = 12/131 (9%)
Query: 146 PFEVVYYPRASTP-EFCVKASLVKAALQIRWCSGMRFKMAFETEDSSRISWFMGTISSVQ 204
PF + Y PR + P EF V + A+ + GMRF+M FETE+ + +MGT++ +
Sbjct: 262 PFTIFYNPRWAAPAEFVVPLAKYTKAMYAQVSLGMRFRMIFETEECG-VRRYMGTVTGIS 320
Query: 205 VADPIRWPDSPWRLLQVTWDEPDLLQNVKRVSPWLVELVSNMPTIHLSPFS---PPRKKL 261
DP+RW +S WR LQ+ WDE RVS W +E V L+PF PP +
Sbjct: 321 DLDPVRWKNSQWRNLQIGWDESAAGDRPSRVSVWDIEPV-------LTPFYICPPPFFRP 373
Query: 262 RLPQHPDFPLD 272
R P P D
Sbjct: 374 RFSGQPGMPDD 384
>AT1G30330.2 | Symbols: ARF6 | ARF6 (AUXIN RESPONSE FACTOR 6);
transcription factor | chr1:10686125-10690036 REVERSE
Length = 935
Score = 102 bits (254), Expect = 4e-22, Method: Compositional matrix adjust.
Identities = 42/69 (60%), Positives = 54/69 (78%)
Query: 2 PPVQTILAKDVHGETWKFRHIYRGTPRRHLLTTGWSTFVNHKKLVAGDSIVFLRADNGDL 61
PP Q ++A+D+H WKFRHI+RG P+RHLLTTGWS FV+ K+LVAGDS++F+ D L
Sbjct: 164 PPAQELMARDLHDNEWKFRHIFRGQPKRHLLTTGWSVFVSAKRLVAGDSVLFIWNDKNQL 223
Query: 62 CVGIRRAKR 70
+GIRRA R
Sbjct: 224 LLGIRRANR 232
Score = 87.0 bits (214), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 48/109 (44%), Positives = 65/109 (59%), Gaps = 3/109 (2%)
Query: 147 FEVVYYPRASTPEFCVK-ASLVKAALQIRWCSGMRFKMAFETEDSSRISWFMGTISSVQV 205
F + Y PRAS EF + A VKA R GMRF+M FETE+SS + +MGTI+ +
Sbjct: 265 FTIFYNPRASPSEFVIPLAKYVKAVYHTRVSVGMRFRMLFETEESS-VRRYMGTITGICD 323
Query: 206 ADPIRWPDSPWRLLQVTWDEPDLLQNVKRVSPWLVELVSNMPTIHLSPF 254
DP RW +S WR ++V WDE + RVS W +E ++ P ++ SPF
Sbjct: 324 LDPTRWANSHWRSVKVGWDESTAGERQPRVSLWEIEPLTTFP-MYPSPF 371
>AT1G30330.1 | Symbols: ARF6 | ARF6 (AUXIN RESPONSE FACTOR 6);
transcription factor | chr1:10686125-10690036 REVERSE
Length = 933
Score = 102 bits (254), Expect = 4e-22, Method: Compositional matrix adjust.
Identities = 42/69 (60%), Positives = 54/69 (78%)
Query: 2 PPVQTILAKDVHGETWKFRHIYRGTPRRHLLTTGWSTFVNHKKLVAGDSIVFLRADNGDL 61
PP Q ++A+D+H WKFRHI+RG P+RHLLTTGWS FV+ K+LVAGDS++F+ D L
Sbjct: 162 PPAQELMARDLHDNEWKFRHIFRGQPKRHLLTTGWSVFVSAKRLVAGDSVLFIWNDKNQL 221
Query: 62 CVGIRRAKR 70
+GIRRA R
Sbjct: 222 LLGIRRANR 230
Score = 87.0 bits (214), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 48/109 (44%), Positives = 65/109 (59%), Gaps = 3/109 (2%)
Query: 147 FEVVYYPRASTPEFCVK-ASLVKAALQIRWCSGMRFKMAFETEDSSRISWFMGTISSVQV 205
F + Y PRAS EF + A VKA R GMRF+M FETE+SS + +MGTI+ +
Sbjct: 263 FTIFYNPRASPSEFVIPLAKYVKAVYHTRVSVGMRFRMLFETEESS-VRRYMGTITGICD 321
Query: 206 ADPIRWPDSPWRLLQVTWDEPDLLQNVKRVSPWLVELVSNMPTIHLSPF 254
DP RW +S WR ++V WDE + RVS W +E ++ P ++ SPF
Sbjct: 322 LDPTRWANSHWRSVKVGWDESTAGERQPRVSLWEIEPLTTFP-MYPSPF 369
>ATMG00940.1 | Symbols: ORF164 | hypothetical protein |
chrM:251403-251897 REVERSE
Length = 164
Score = 90.1 bits (222), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 61/170 (35%), Positives = 85/170 (50%), Gaps = 21/170 (12%)
Query: 54 LRADNGDLCVGIRRA--KRGIGGSPESSWNPAGGNCVMPYGGFTGFLREEDNKIMRXXXX 111
+R ++ +G+RRA +GG+ + GG+ Y G + +ED+ +
Sbjct: 1 MRKSADEMFIGVRRAPISSNVGGT-----SFYGGDEYCSYYQSNGGVAKEDDGSAKKGFR 55
Query: 112 XXXXXXXXXXXXXXXXKVKSEAVIEAASLAANGKPFEVVYYPRASTPEFCVKASLVKAAL 171
K+ +EAV EA + AA G PFEVVYYP A +F VKA V+A++
Sbjct: 56 RTGKG-----------KLTAEAVSEAINRAAQGLPFEVVYYPTAGWSDFVVKAEDVEASM 104
Query: 172 QIRWCSGMRFKMAFETEDSSRISWFMGTI-SSVQVADPIRWPDSPWRLLQ 220
I W G R KMA ETEDSSRI+WF G + + Q P W SPW +
Sbjct: 105 AIFWTPGTRVKMAMETEDSSRITWFQGIVFYTYQETGP--WRGSPWNSFR 152
>AT1G43950.1 | Symbols: ARF23 | ARF23 (AUXIN RESPONSE FACTOR 23);
transcription factor | chr1:16672582-16673952 REVERSE
Length = 222
Score = 71.2 bits (173), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 34/64 (53%), Positives = 42/64 (65%), Gaps = 3/64 (4%)
Query: 3 PVQTILAKDVHGETWKFRHIYRGTPRRHLLTTGWSTFVNHKKLVAGDSIVFLRADNGDLC 62
P Q ++A D+HG W+F+H YR PR TTGW+ F KKLV GD IVF R + G+L
Sbjct: 162 PAQELIAIDLHGNQWRFKHSYR-VPRGD--TTGWNAFTTSKKLVVGDVIVFARGETGELR 218
Query: 63 VGIR 66
VGIR
Sbjct: 219 VGIR 222
>AT1G13260.1 | Symbols: RAV1 | RAV1; DNA binding / transcription
factor/ transcription repressor | chr1:4542386-4543420
FORWARD
Length = 344
Score = 58.2 bits (139), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 35/91 (38%), Positives = 50/91 (54%), Gaps = 14/91 (15%)
Query: 10 KDVHGETWKFRHIYRGTPRRHLLTTGWSTFVNHKKLVAGDSIVFLRADNGD--LCVGIR- 66
+DV+G+ W+FR+ Y + + ++LT GWS FV K L AGD + F R++ D L +G +
Sbjct: 231 EDVNGKVWRFRYSYWNSSQSYVLTKGWSRFVKEKNLRAGDVVSFSRSNGQDQQLYIGWKS 290
Query: 67 ---------RAKR--GIGGSPESSWNPAGGN 86
R R G+ SPESS N GN
Sbjct: 291 RSGSDLDAGRVLRLFGVNISPESSRNDVVGN 321
>AT3G25730.1 | Symbols: | AP2 domain-containing transcription
factor, putative | chr3:9396505-9397506 FORWARD
Length = 333
Score = 56.6 bits (135), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 23/51 (45%), Positives = 36/51 (70%)
Query: 10 KDVHGETWKFRHIYRGTPRRHLLTTGWSTFVNHKKLVAGDSIVFLRADNGD 60
+DV+G+ W+FR+ Y + + ++LT GWS FV K+L AGD I F R+++ D
Sbjct: 228 EDVNGKVWRFRYSYWNSSQSYVLTKGWSRFVKEKRLCAGDLISFKRSNDQD 278
>AT2G36080.1 | Symbols: | DNA-binding protein, putative |
chr2:15148612-15151411 REVERSE
Length = 244
Score = 53.5 bits (127), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 30/84 (35%), Positives = 45/84 (53%), Gaps = 4/84 (4%)
Query: 10 KDVHGETWKFRHIYRGTPRRHLLTTGWSTFVNHKKLVAGDSIVF--LRADNGDLCVGIRR 67
+D G+ W+FR+ Y + + ++LT GWS +V K L AGD ++F R+D G +G RR
Sbjct: 83 EDEEGKPWRFRYSYWNSSQSYVLTKGWSRYVKEKHLDAGDVVLFHRHRSDGGRFFIGWRR 142
Query: 68 AKRGIGGSPESSWNPAGGNCVMPY 91
RG S S+ N + Y
Sbjct: 143 --RGDSSSSSDSYRHVQSNASLQY 164
>AT5G06250.2 | Symbols: | transcription factor |
chr5:1892714-1894058 REVERSE
Length = 282
Score = 53.1 bits (126), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 28/68 (41%), Positives = 42/68 (61%), Gaps = 4/68 (5%)
Query: 10 KDVHGETWKFRHIYRGTPRRHLLTTGWSTFVNHKKLVAGDSIVFL--RADNGDLCVGIRR 67
+D G++W+FR+ Y + + ++LT GWS FV K+L GD + F R+D+ L +G RR
Sbjct: 98 EDESGKSWRFRYSYWNSSQSYVLTKGWSRFVKDKQLDPGDVVFFQRHRSDSRRLFIGWRR 157
Query: 68 AKRGIGGS 75
RG G S
Sbjct: 158 --RGQGSS 163
>AT4G01500.1 | Symbols: NGA4 | NGA4 (NGATHA4); transcription factor
| chr4:639791-640792 FORWARD
Length = 333
Score = 53.1 bits (126), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 20/47 (42%), Positives = 32/47 (68%)
Query: 10 KDVHGETWKFRHIYRGTPRRHLLTTGWSTFVNHKKLVAGDSIVFLRA 56
+D +G+ W+FR+ Y + + +++T GWS FV KKL AGD++ F R
Sbjct: 76 QDKNGKMWRFRYSYWNSSQSYVMTKGWSRFVKEKKLFAGDTVSFYRG 122
>AT2G36080.2 | Symbols: | DNA-binding protein, putative |
chr2:15150890-15151411 REVERSE
Length = 173
Score = 52.8 bits (125), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 30/84 (35%), Positives = 45/84 (53%), Gaps = 4/84 (4%)
Query: 10 KDVHGETWKFRHIYRGTPRRHLLTTGWSTFVNHKKLVAGDSIVF--LRADNGDLCVGIRR 67
+D G+ W+FR+ Y + + ++LT GWS +V K L AGD ++F R+D G +G RR
Sbjct: 83 EDEEGKPWRFRYSYWNSSQSYVLTKGWSRYVKEKHLDAGDVVLFHRHRSDGGRFFIGWRR 142
Query: 68 AKRGIGGSPESSWNPAGGNCVMPY 91
RG S S+ N + Y
Sbjct: 143 --RGDSSSSSDSYRHVQSNASLQY 164
>AT1G68840.1 | Symbols: RAV2, RAP2.8, TEM2 | RAV2 (REGULATOR OF THE
ATPASE OF THE VACUOLAR MEMBRANE); DNA binding /
transcription factor/ transcription repressor |
chr1:25880442-25881500 FORWARD
Length = 352
Score = 52.8 bits (125), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 21/47 (44%), Positives = 32/47 (68%)
Query: 10 KDVHGETWKFRHIYRGTPRRHLLTTGWSTFVNHKKLVAGDSIVFLRA 56
+DV+G+ W+FR+ Y + + ++LT GWS FV K L AGD + F R+
Sbjct: 232 EDVNGKVWRFRYSYWNSSQSYVLTKGWSRFVKEKNLRAGDVVTFERS 278
>AT5G06250.1 | Symbols: | transcription factor |
chr5:1892714-1894058 REVERSE
Length = 267
Score = 52.8 bits (125), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 28/68 (41%), Positives = 42/68 (61%), Gaps = 4/68 (5%)
Query: 10 KDVHGETWKFRHIYRGTPRRHLLTTGWSTFVNHKKLVAGDSIVFL--RADNGDLCVGIRR 67
+D G++W+FR+ Y + + ++LT GWS FV K+L GD + F R+D+ L +G RR
Sbjct: 98 EDESGKSWRFRYSYWNSSQSYVLTKGWSRFVKDKQLDPGDVVFFQRHRSDSRRLFIGWRR 157
Query: 68 AKRGIGGS 75
RG G S
Sbjct: 158 --RGQGSS 163
>AT2G46870.1 | Symbols: NGA1 | NGA1 (NGATHA1); transcription factor
| chr2:19261313-19262245 FORWARD
Length = 310
Score = 50.8 bits (120), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 23/55 (41%), Positives = 35/55 (63%), Gaps = 6/55 (10%)
Query: 10 KDVHGETWKFRHIYRGTPRRHLLTTGWSTFVNHKKLVAGDSIVFLRADNGDLCVG 64
+D+ G++W+FR+ Y + + +++T GWS FV KKL AGD + F R CVG
Sbjct: 77 EDLTGKSWRFRYSYWNSSQSYVMTKGWSRFVKDKKLDAGDIVSFQR------CVG 125