Jatropha Genome Database
- JcCB0181921.10
BLASTP 2.2.23 [Feb-03-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= JcCB0181921.10 - phase: 0 /pseudo
(110 letters)
Database: TAIR9_pep
33,410 sequences; 13,434,913 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AT4G35790.1 | Symbols: ATPLDDELTA, PLDDELTA | ATPLDDELTA; phosph... 59 5e-10
AT4G35790.2 | Symbols: ATPLDDELTA, PLDDELTA | ATPLDDELTA; phosph... 59 5e-10
AT4G35790.3 | Symbols: ATPLDDELTA, PLDDELTA | ATPLDDELTA; phosph... 59 5e-10
AT4G11840.1 | Symbols: PLDGAMMA3 | PLDGAMMA3; phospholipase D | ... 55 9e-09
AT4G11850.1 | Symbols: PLDGAMMA1, MEE54 | PLDGAMMA1; phospholipa... 52 1e-07
>AT4G35790.1 | Symbols: ATPLDDELTA, PLDDELTA | ATPLDDELTA;
phospholipase D | chr4:16955774-16959875 REVERSE
Length = 868
Score = 59.3 bits (142), Expect = 5e-10, Method: Composition-based stats.
Identities = 30/72 (41%), Positives = 42/72 (58%), Gaps = 15/72 (20%)
Query: 24 FLHGELDLWIIEAKSLPNMDLPAEHIRRCFTVFGSCSDPC-------------GQKGVKH 70
LHG+LDL I++A+ LPNMD+ +EH+RR FT +C+ P G K ++
Sbjct: 11 LLHGDLDLKIVKARRLPNMDMFSEHLRRLFTACNACARPTDTDDVDPRDKGEFGDKNIRS 70
Query: 71 SGKNSMITSDPY 82
K +ITSDPY
Sbjct: 71 HRK--VITSDPY 80
>AT4G35790.2 | Symbols: ATPLDDELTA, PLDDELTA | ATPLDDELTA;
phospholipase D | chr4:16955774-16959875 REVERSE
Length = 857
Score = 59.3 bits (142), Expect = 5e-10, Method: Composition-based stats.
Identities = 30/72 (41%), Positives = 42/72 (58%), Gaps = 15/72 (20%)
Query: 24 FLHGELDLWIIEAKSLPNMDLPAEHIRRCFTVFGSCSDPC-------------GQKGVKH 70
LHG+LDL I++A+ LPNMD+ +EH+RR FT +C+ P G K ++
Sbjct: 11 LLHGDLDLKIVKARRLPNMDMFSEHLRRLFTACNACARPTDTDDVDPRDKGEFGDKNIRS 70
Query: 71 SGKNSMITSDPY 82
K +ITSDPY
Sbjct: 71 HRK--VITSDPY 80
>AT4G35790.3 | Symbols: ATPLDDELTA, PLDDELTA | ATPLDDELTA;
phospholipase D | chr4:16956681-16959875 REVERSE
Length = 693
Score = 59.3 bits (142), Expect = 5e-10, Method: Composition-based stats.
Identities = 30/72 (41%), Positives = 42/72 (58%), Gaps = 15/72 (20%)
Query: 24 FLHGELDLWIIEAKSLPNMDLPAEHIRRCFTVFGSCSDPC-------------GQKGVKH 70
LHG+LDL I++A+ LPNMD+ +EH+RR FT +C+ P G K ++
Sbjct: 11 LLHGDLDLKIVKARRLPNMDMFSEHLRRLFTACNACARPTDTDDVDPRDKGEFGDKNIRS 70
Query: 71 SGKNSMITSDPY 82
K +ITSDPY
Sbjct: 71 HRK--VITSDPY 80
>AT4G11840.1 | Symbols: PLDGAMMA3 | PLDGAMMA3; phospholipase D |
chr4:7122152-7125882 REVERSE
Length = 866
Score = 55.1 bits (131), Expect = 9e-09, Method: Composition-based stats.
Identities = 36/90 (40%), Positives = 47/90 (52%), Gaps = 14/90 (15%)
Query: 1 MGSGSPNS-------QITPYTGATTSVEPSFLHGELDLWIIEAKSLPNMDLPAEHIRRCF 53
MG GS N Q+ P+ ++ S+ LHG LD+W+ EAK LPNMD H
Sbjct: 13 MGGGSSNEFGQWLDKQLVPFDTSSGSLRVELLHGNLDIWVKEAKHLPNMD--GFH----N 66
Query: 54 TVFGSCSDPCGQKGVKHSGKN-SMITSDPY 82
T+ G G++ K G+N S ITSDPY
Sbjct: 67 TLVGGMFFGLGRRNHKVDGENSSKITSDPY 96
>AT4G11850.1 | Symbols: PLDGAMMA1, MEE54 | PLDGAMMA1;
phospholipase D | chr4:7129352-7132937 REVERSE
Length = 858
Score = 51.6 bits (122), Expect = 1e-07, Method: Composition-based stats.
Identities = 31/74 (41%), Positives = 40/74 (54%), Gaps = 8/74 (10%)
Query: 9 QITPYTGATTSVEPSFLHGELDLWIIEAKSLPNMDLPAEHIRRCFTVFGSCSDPCGQKGV 68
Q P+ ++ S+ LHG LD+W+ EAK LPNMD H R G G+K V
Sbjct: 24 QYVPFATSSGSLRVELLHGNLDIWVKEAKHLPNMD--GFHNR-----LGGMLSGLGRKKV 76
Query: 69 KHSGKNSMITSDPY 82
+ K+S ITSDPY
Sbjct: 77 EGE-KSSKITSDPY 89