Jatropha Genome Database

JcCB0181351.10
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCB0181351.10 - phase: 2 /partial
         (160 letters)

Database: TAIR9_pep 
           33,410 sequences; 13,434,913 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT1G49520.1 | Symbols:  | SWIB complex BAF60b domain-containing ...   137   3e-33
AT3G19080.1 | Symbols:  | SWIB complex BAF60b domain-containing ...   130   3e-31
AT4G22360.1 | Symbols:  | SWIB complex BAF60b domain-containing ...   101   2e-22
AT2G14880.1 | Symbols:  | SWIB complex BAF60b domain-containing ...    69   1e-12
AT2G35605.1 | Symbols:  | SWIB complex BAF60b domain-containing ...    69   1e-12
AT3G03590.1 | Symbols:  | SWIB complex BAF60b domain-containing ...    68   3e-12
AT4G34290.1 | Symbols:  | SWIB complex BAF60b domain-containing ...    67   6e-12
AT4G26810.2 | Symbols:  | SWIB complex BAF60b domain-containing ...    59   1e-09
AT4G26810.1 | Symbols:  | SWIB complex BAF60b domain-containing ...    59   1e-09
AT1G31760.1 | Symbols:  | SWIB complex BAF60b domain-containing ...    59   2e-09
AT3G01890.1 | Symbols:  | SWIB complex BAF60b domain-containing ...    46   9e-06

>AT1G49520.1 | Symbols:  | SWIB complex BAF60b domain-containing
           protein | chr1:18329736-18331691 FORWARD
          Length = 372

 Score =  137 bits (344), Expect = 3e-33,   Method: Compositional matrix adjust.
 Identities = 58/84 (69%), Positives = 73/84 (86%)

Query: 75  FTKLCSLSPQLQEFIGESELARTEVVKRLWAYIRERNLQDPKNKQNIICDESLHALFHVN 134
           F K+C LSPQL++F+G S+LARTEVVK++WAYIRE +LQDP N++NI+CDESLH+LF V 
Sbjct: 102 FNKICQLSPQLEKFLGTSQLARTEVVKKMWAYIREHDLQDPTNRRNILCDESLHSLFRVK 161

Query: 135 SINMFQMNKALSKHIWPLNEEGMC 158
           +INMFQMNKAL+KHIW LN+   C
Sbjct: 162 TINMFQMNKALAKHIWALNDGDGC 185



 Score =  127 bits (320), Expect = 3e-30,   Method: Compositional matrix adjust.
 Identities = 58/81 (71%), Positives = 67/81 (82%)

Query: 75  FTKLCSLSPQLQEFIGESELARTEVVKRLWAYIRERNLQDPKNKQNIICDESLHALFHVN 134
           FTK+CSLSP+LQ F G  +LARTEVVK LW YI+E NLQDP +K+ IICDESL +LF V 
Sbjct: 251 FTKVCSLSPELQAFTGTPQLARTEVVKMLWKYIKENNLQDPSDKRTIICDESLRSLFPVE 310

Query: 135 SINMFQMNKALSKHIWPLNEE 155
           SINMFQMNK L+KHIWPL +E
Sbjct: 311 SINMFQMNKQLAKHIWPLVQE 331


>AT3G19080.1 | Symbols:  | SWIB complex BAF60b domain-containing
           protein | chr3:6596082-6598667 FORWARD
          Length = 462

 Score =  130 bits (327), Expect = 3e-31,   Method: Compositional matrix adjust.
 Identities = 54/86 (62%), Positives = 71/86 (82%)

Query: 75  FTKLCSLSPQLQEFIGESELARTEVVKRLWAYIRERNLQDPKNKQNIICDESLHALFHVN 134
            TK+  LSPQL++ +G S+L RTEVVK++WAYIRE++LQDPK+++ I+CDE LH+LF V 
Sbjct: 116 ITKVSQLSPQLEKVVGASQLGRTEVVKKMWAYIREKDLQDPKDRRKIVCDELLHSLFRVK 175

Query: 135 SINMFQMNKALSKHIWPLNEEGMCPN 160
           +INMFQMNKAL+KHIWPL +   C N
Sbjct: 176 TINMFQMNKALTKHIWPLGDGDGCAN 201



 Score =  125 bits (314), Expect = 1e-29,   Method: Compositional matrix adjust.
 Identities = 56/80 (70%), Positives = 66/80 (82%)

Query: 75  FTKLCSLSPQLQEFIGESELARTEVVKRLWAYIRERNLQDPKNKQNIICDESLHALFHVN 134
           F K+CSLSP+LQ F G +ELARTEVVK LW YI+E NLQDP +K++IICDES  +LF V 
Sbjct: 264 FAKVCSLSPELQAFTGVTELARTEVVKLLWKYIKENNLQDPNDKRSIICDESFRSLFPVE 323

Query: 135 SINMFQMNKALSKHIWPLNE 154
           SINMFQMNK L+KHIWPL +
Sbjct: 324 SINMFQMNKQLTKHIWPLED 343



 Score = 68.9 bits (167), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 33/71 (46%), Positives = 46/71 (64%), Gaps = 2/71 (2%)

Query: 81  LSPQLQEFIGESE--LARTEVVKRLWAYIRERNLQDPKNKQNIICDESLHALFHVNSINM 138
           LS  L +F+G+ E  L+R +VVKRLW YI   +LQDP +K+ +ICDE L  LF V+S   
Sbjct: 387 LSDALVKFLGDGENSLSRADVVKRLWEYINHNDLQDPSDKRRVICDEKLKELFEVDSFED 446

Query: 139 FQMNKALSKHI 149
             ++K L+ H 
Sbjct: 447 TSVSKLLTNHF 457


>AT4G22360.1 | Symbols:  | SWIB complex BAF60b domain-containing
           protein | chr4:11807811-11809660 FORWARD
          Length = 385

 Score =  101 bits (252), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 42/79 (53%), Positives = 60/79 (75%)

Query: 75  FTKLCSLSPQLQEFIGESELARTEVVKRLWAYIRERNLQDPKNKQNIICDESLHALFHVN 134
             K+C +SP+L+  +GE  L RTE+V++LWAYIR+ NLQDP NK+ IICD++L  +F  +
Sbjct: 197 LNKVCRVSPELEVVVGEPALPRTEIVRQLWAYIRKNNLQDPSNKRKIICDDALRVVFETD 256

Query: 135 SINMFQMNKALSKHIWPLN 153
             +MF+MNK L+KHI PL+
Sbjct: 257 CTDMFKMNKLLAKHILPLD 275



 Score = 60.5 bits (145), Expect = 4e-10,   Method: Compositional matrix adjust.
 Identities = 29/78 (37%), Positives = 46/78 (58%), Gaps = 2/78 (2%)

Query: 75  FTKLCSLSPQLQEFIG--ESELARTEVVKRLWAYIRERNLQDPKNKQNIICDESLHALFH 132
            +   +LS  L +F G  E+E+A  E+++R+W YI+  NL+DP N   I CDE L  L  
Sbjct: 305 ISSTVTLSEPLGKFFGTGETEMADEEIIRRVWEYIKLNNLEDPVNPMAIQCDEKLRDLLG 364

Query: 133 VNSINMFQMNKALSKHIW 150
             SI+   +N+ L +H++
Sbjct: 365 CESISAVGINEMLRRHMY 382


>AT2G14880.1 | Symbols:  | SWIB complex BAF60b domain-containing
           protein | chr2:6393686-6394841 REVERSE
          Length = 141

 Score = 69.3 bits (168), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 28/70 (40%), Positives = 48/70 (68%), Gaps = 1/70 (1%)

Query: 81  LSPQLQEFIGESELARTEVVKRLWAYIRERNLQDPKNKQNIICDESLHALFHV-NSINMF 139
           +SP++Q+ +   E+ART+ +KR+WAYI+E +LQDP+NK+ I+CDE L  +F   + +   
Sbjct: 71  VSPEMQDIVELPEIARTQALKRIWAYIKEHDLQDPQNKREILCDEKLKKIFEGRDRVGFL 130

Query: 140 QMNKALSKHI 149
           ++ K +  H 
Sbjct: 131 EIAKLIGPHF 140


>AT2G35605.1 | Symbols:  | SWIB complex BAF60b domain-containing
           protein | chr2:14946161-14947027 FORWARD
          Length = 109

 Score = 68.9 bits (167), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 31/73 (42%), Positives = 50/73 (68%), Gaps = 1/73 (1%)

Query: 77  KLCSLSPQLQEFIGESELARTEVVKRLWAYIRERNLQDPKNKQNIICDESLHALFHV-NS 135
           K+  +S  L  FIGE+E++RT  VK++W YI+  NLQ+P NK+ I+CDE L  +F   ++
Sbjct: 32  KVVPVSKPLANFIGENEVSRTTAVKKIWEYIKLNNLQNPVNKREILCDEQLKTIFSGKDT 91

Query: 136 INMFQMNKALSKH 148
           +   +++K LS+H
Sbjct: 92  VGFLEISKLLSQH 104


>AT3G03590.1 | Symbols:  | SWIB complex BAF60b domain-containing
           protein | chr3:865341-866669 REVERSE
          Length = 143

 Score = 67.8 bits (164), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 27/74 (36%), Positives = 47/74 (63%), Gaps = 1/74 (1%)

Query: 77  KLCSLSPQLQEFIGESELARTEVVKRLWAYIRERNLQDPKNKQNIICDESLHALFHV-NS 135
           K+  +SP L +F+G  E +RT+ +K +W YI+  +LQ+P +K+ I CDE+L  +F   + 
Sbjct: 66  KVTPVSPVLAQFLGTGETSRTDAIKGIWTYIKSHDLQNPADKREIFCDETLKLIFEGKDK 125

Query: 136 INMFQMNKALSKHI 149
           +   +++K LS H 
Sbjct: 126 VGFLEISKLLSPHF 139


>AT4G34290.1 | Symbols:  | SWIB complex BAF60b domain-containing
           protein | chr4:16410883-16412122 FORWARD
          Length = 144

 Score = 66.6 bits (161), Expect = 6e-12,   Method: Compositional matrix adjust.
 Identities = 27/69 (39%), Positives = 46/69 (66%), Gaps = 1/69 (1%)

Query: 81  LSPQLQEFIGESELARTEVVKRLWAYIRERNLQDPKNKQNIICDESLHALFHVN-SINMF 139
           +S  +Q+ +G  E+ RT+ +KR+WAYI+E +LQDP+NK++I+CDE L  +F     +   
Sbjct: 74  VSQAMQDVVGVPEIPRTQALKRIWAYIKEHDLQDPQNKRDILCDEKLKKIFEGKERVGFL 133

Query: 140 QMNKALSKH 148
           ++ K +  H
Sbjct: 134 EIAKLIGPH 142


>AT4G26810.2 | Symbols:  | SWIB complex BAF60b domain-containing
           protein | chr4:13492247-13492649 REVERSE
          Length = 106

 Score = 58.9 bits (141), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 24/54 (44%), Positives = 37/54 (68%)

Query: 78  LCSLSPQLQEFIGESELARTEVVKRLWAYIRERNLQDPKNKQNIICDESLHALF 131
           L +L   L+ F+G+S+++R     R+W+YI+  NLQDPKNK  +ICDE L ++ 
Sbjct: 23  LVNLPSTLRNFVGQSQISRLGCFMRVWSYIKTNNLQDPKNKNVVICDEKLKSIL 76


>AT4G26810.1 | Symbols:  | SWIB complex BAF60b domain-containing
           protein | chr4:13492247-13492649 REVERSE
          Length = 106

 Score = 58.9 bits (141), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 24/54 (44%), Positives = 37/54 (68%)

Query: 78  LCSLSPQLQEFIGESELARTEVVKRLWAYIRERNLQDPKNKQNIICDESLHALF 131
           L +L   L+ F+G+S+++R     R+W+YI+  NLQDPKNK  +ICDE L ++ 
Sbjct: 23  LVNLPSTLRNFVGQSQISRLGCFMRVWSYIKTNNLQDPKNKNVVICDEKLKSIL 76


>AT1G31760.1 | Symbols:  | SWIB complex BAF60b domain-containing
           protein | chr1:11372602-11373414 REVERSE
          Length = 112

 Score = 58.5 bits (140), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 27/70 (38%), Positives = 42/70 (60%), Gaps = 1/70 (1%)

Query: 81  LSPQLQEFIGESELARTEVVKRLWAYIRERNLQDPKNKQNIICDESLHALFHV-NSINMF 139
           +S QL  F GE EL R   +K++W Y++  NLQ+P NK+ I CD+ L  +F   + + + 
Sbjct: 39  VSQQLASFAGERELTRGSALKKVWEYVKLHNLQNPANKKEIHCDDKLKTIFDGKDKVGIT 98

Query: 140 QMNKALSKHI 149
           ++ K LS H 
Sbjct: 99  EIMKLLSPHF 108


>AT3G01890.1 | Symbols:  | SWIB complex BAF60b domain-containing
           protein | chr3:310332-311772 FORWARD
          Length = 458

 Score = 46.2 bits (108), Expect = 9e-06,   Method: Compositional matrix adjust.
 Identities = 19/70 (27%), Positives = 37/70 (52%)

Query: 82  SPQLQEFIGESELARTEVVKRLWAYIRERNLQDPKNKQNIICDESLHALFHVNSINMFQM 141
           SP L + +G     R  ++  +W Y++ R LQ+P +     CD +LH++F    +    +
Sbjct: 253 SPALMQVLGIEVDTRPRIIAAIWHYVKVRKLQNPNDPSFFNCDAALHSVFGEEKMKFTML 312

Query: 142 NKALSKHIWP 151
           +  +S+H+ P
Sbjct: 313 SHKISQHLSP 322