Jatropha Genome Database

JcCB0181311.10
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCB0181311.10 + phase: 0 /partial
         (150 letters)

Database: TAIR9_pep 
           33,410 sequences; 13,434,913 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT3G21630.1 | Symbols: CERK1, LYSM RLK1 | CERK1 (CHITIN ELICITOR...    86   6e-18
AT1G18390.1 | Symbols:  | ATP binding / kinase/ protein kinase/ ...    50   6e-07
AT3G55950.1 | Symbols: CCR3, ATCRR3 | CCR3 (ARABIDOPSIS THALIANA...    49   1e-06
AT1G18390.2 | Symbols:  | ATP binding / kinase/ protein kinase/ ...    48   2e-06

>AT3G21630.1 | Symbols: CERK1, LYSM RLK1 | CERK1 (CHITIN ELICITOR
           RECEPTOR KINASE 1); kinase/ receptor signaling protein/
           transmembrane receptor protein kinase |
           chr3:7615543-7618530 REVERSE
          Length = 617

 Score = 86.3 bits (212), Expect = 6e-18,   Method: Compositional matrix adjust.
 Identities = 41/53 (77%), Positives = 46/53 (86%)

Query: 98  GLAPSPGLTGITVDKSVEFSYEELAQATDNFNLANKIGQGGFGSVYYAELRGE 150
           G   SPG+  I+VDKSVEFS EELA+ATDNFNL+ KIGQGGFG+VYYAELRGE
Sbjct: 292 GAGVSPGIAAISVDKSVEFSLEELAKATDNFNLSFKIGQGGFGAVYYAELRGE 344


>AT1G18390.1 | Symbols:  | ATP binding / kinase/ protein kinase/
           protein serine/threonine kinase/ protein tyrosine kinase
           | chr1:6325876-6329935 FORWARD
          Length = 648

 Score = 49.7 bits (117), Expect = 6e-07,   Method: Composition-based stats.
 Identities = 22/57 (38%), Positives = 36/57 (63%), Gaps = 7/57 (12%)

Query: 99  LAPSPGLTGITVDKSVE-------FSYEELAQATDNFNLANKIGQGGFGSVYYAELR 148
           ++  P      ++K+ E       FSYEEL +AT+NF+ + ++G GGFG+VYY +L+
Sbjct: 302 ISSDPSAKSFDIEKAEELLVGVHIFSYEELEEATNNFDPSKELGDGGFGTVYYGKLK 358


>AT3G55950.1 | Symbols: CCR3, ATCRR3 | CCR3 (ARABIDOPSIS THALIANA
           CRINKLY4 RELATED 3); kinase | chr3:20753903-20756347
           REVERSE
          Length = 814

 Score = 48.9 bits (115), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 23/37 (62%), Positives = 27/37 (72%)

Query: 111 DKSVEFSYEELAQATDNFNLANKIGQGGFGSVYYAEL 147
           DK+ EFS+ ELA AT NF+L NKIG G FG VY  +L
Sbjct: 479 DKAEEFSFSELASATGNFSLENKIGSGSFGVVYRGKL 515


>AT1G18390.2 | Symbols:  | ATP binding / kinase/ protein kinase/
           protein serine/threonine kinase/ protein tyrosine kinase
           | chr1:6327463-6329935 FORWARD
          Length = 654

 Score = 47.8 bits (112), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 19/33 (57%), Positives = 28/33 (84%)

Query: 116 FSYEELAQATDNFNLANKIGQGGFGSVYYAELR 148
           FSYEEL +AT+NF+ + ++G GGFG+VYY +L+
Sbjct: 332 FSYEELEEATNNFDPSKELGDGGFGTVYYGKLK 364