Jatropha Genome Database

JcCB0180631.20

BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCB0180631.20 - phase: 0 /pseudo
         (278 letters)

Database: TAIR9_pep 
           33,410 sequences; 13,434,913 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT4G12560.2 | Symbols:  | F-box family protein | chr4:7441815-74...    72   5e-13
AT4G12560.1 | Symbols:  | F-box family protein | chr4:7441815-74...    72   5e-13
AT1G71320.1 | Symbols:  | S locus F-box-related / SLF-related | ...    54   1e-07
AT1G12170.1 | Symbols:  | F-box family protein | chr1:4128607-41...    52   4e-07

>AT4G12560.2 | Symbols:  | F-box family protein |
           chr4:7441815-7443157 FORWARD
          Length = 413

 Score = 71.6 bits (174), Expect = 5e-13,   Method: Compositional matrix adjust.
 Identities = 72/236 (30%), Positives = 102/236 (43%), Gaps = 76/236 (32%)

Query: 5   VPEEIVGQIFSKLPAKSLLRFKCLSKSLNSLISSPNFIRSHVPR--SQGD----LPKYVC 58
           +P +IV  IF +LPAK+L+R + LSK    LI+ P+FI SH+ R    GD    L +   
Sbjct: 4   IPMDIVNDIFLRLPAKTLVRCRALSKPCYHLINDPDFIESHLHRVLQTGDHLMILLRGAL 63

Query: 59  GSYFFDVNTAVEAKPVKSPLKQQMPFLNQTNHKILCSCDGVILLRARINTPTLYSKDNEA 118
             Y  D+++      V+ P+K+  P       ++  S +G+I L    N+PT        
Sbjct: 64  RLYSVDLDSLDSVSDVEHPMKRGGP------TEVFGSSNGLIGLS---NSPT-------- 106

Query: 119 NALRMCXXXXXXXXXXXXXXXXXXXYYSIIVWNPLIREYRIFPMPESGD---------YV 169
                                       + V+NP  R+    P P S D         YV
Sbjct: 107 ---------------------------DLAVFNPSTRQIHRLP-PSSIDLPDGSSTRGYV 138

Query: 170 SYGLGYDSVTDDYKVV-----------QCGISKNHLIKXNALIVLSLKSNSMRKHE 214
            YGLGYDSV+DDYKVV           + G S  + +K     V SLK NS ++ E
Sbjct: 139 FYGLGYDSVSDDYKVVRMVQFKIDSEDELGCSFPYEVK-----VFSLKKNSWKRIE 189


>AT4G12560.1 | Symbols:  | F-box family protein |
           chr4:7441815-7443157 FORWARD
          Length = 413

 Score = 71.6 bits (174), Expect = 5e-13,   Method: Compositional matrix adjust.
 Identities = 72/236 (30%), Positives = 102/236 (43%), Gaps = 76/236 (32%)

Query: 5   VPEEIVGQIFSKLPAKSLLRFKCLSKSLNSLISSPNFIRSHVPR--SQGD----LPKYVC 58
           +P +IV  IF +LPAK+L+R + LSK    LI+ P+FI SH+ R    GD    L +   
Sbjct: 4   IPMDIVNDIFLRLPAKTLVRCRALSKPCYHLINDPDFIESHLHRVLQTGDHLMILLRGAL 63

Query: 59  GSYFFDVNTAVEAKPVKSPLKQQMPFLNQTNHKILCSCDGVILLRARINTPTLYSKDNEA 118
             Y  D+++      V+ P+K+  P       ++  S +G+I L    N+PT        
Sbjct: 64  RLYSVDLDSLDSVSDVEHPMKRGGP------TEVFGSSNGLIGLS---NSPT-------- 106

Query: 119 NALRMCXXXXXXXXXXXXXXXXXXXYYSIIVWNPLIREYRIFPMPESGD---------YV 169
                                       + V+NP  R+    P P S D         YV
Sbjct: 107 ---------------------------DLAVFNPSTRQIHRLP-PSSIDLPDGSSTRGYV 138

Query: 170 SYGLGYDSVTDDYKVV-----------QCGISKNHLIKXNALIVLSLKSNSMRKHE 214
            YGLGYDSV+DDYKVV           + G S  + +K     V SLK NS ++ E
Sbjct: 139 FYGLGYDSVSDDYKVVRMVQFKIDSEDELGCSFPYEVK-----VFSLKKNSWKRIE 189


>AT1G71320.1 | Symbols:  | S locus F-box-related / SLF-related |
           chr1:26882485-26883818 FORWARD
          Length = 392

 Score = 53.9 bits (128), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 40/123 (32%), Positives = 57/123 (46%), Gaps = 13/123 (10%)

Query: 3   IRVPEEIVGQIFSKLPAKSLLRFKCLSKSLNSLISSPNFIRSHVPRSQGDLP--KYVCGS 60
           I +P++I   IF  LP KSL RFK LSK   S+I S  F    + R+    P  K++  S
Sbjct: 12  IFIPDDIAEGIFHHLPIKSLARFKVLSKKWTSMIESTYFSHKRLIRTGLPTPNMKFLHIS 71

Query: 61  YFFDVNTAVEAKPVKSPLKQQMPFLNQTNHK-----------ILCSCDGVILLRARINTP 109
             F  N   E     + L +     +Q N K           +L SCDG++LLR   +  
Sbjct: 72  QHFTANFVEEYSNSITFLLETFSRDDQNNRKTFDESQNKTIQVLGSCDGLVLLRIHDDFR 131

Query: 110 TLY 112
           ++Y
Sbjct: 132 SIY 134


>AT1G12170.1 | Symbols:  | F-box family protein |
           chr1:4128607-4129701 REVERSE
          Length = 364

 Score = 52.0 bits (123), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 47/203 (23%), Positives = 84/203 (41%), Gaps = 46/203 (22%)

Query: 1   MEIRVPEEIVGQIFSKLPAKSLLRFKCLSKSLNSLISSPNFIRSHVPRSQGDLPKYVCGS 60
           M + +P E+V +I  ++P  SL RFK + K  N+L  S +F+ +H+ R +   P+++  +
Sbjct: 2   MHVILPWELVEEILYRVPPLSLTRFKIVCKQWNTLFKSKSFVNNHLVRVR---PQFLLWT 58

Query: 61  ----YFFDVNTAVEAKPVKSPLKQQMPFLNQTNHKILCSCDGVILLRARINTPTLYSKDN 116
               Y   VN   + K     L   +P+LN         CDG++   +       +S   
Sbjct: 59  DSKMYSVSVNLNDDQKIDMRELPLDIPYLNNFMRTYFTPCDGLLFCDS-------WSWRK 111

Query: 117 EANALRMCXXXXXXXXXXXXXXXXXXXYYSIIVWNPLIREYRIFPMPESGDYVSYGLGYD 176
           +A                              +WNP +R+ +     +   +   G+GYD
Sbjct: 112 KA-----------------------------AIWNPWLRQTKWIEYSKEKTFTFRGIGYD 142

Query: 177 SVTDD--YKVVQCGI-SKNHLIK 196
           S   D  +K++   I +K  LI+
Sbjct: 143 SGRPDKGHKIIGSSIYNKRKLIE 165