Jatropha Genome Database

JcCB0176661.20
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCB0176661.20 + phase: 0 
         (193 letters)

Database: TAIR9_pep 
           33,410 sequences; 13,434,913 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT2G31410.1 | Symbols:  | unknown protein | chr2:13392220-133928...   185   2e-47

>AT2G31410.1 | Symbols:  | unknown protein | chr2:13392220-13392819
           REVERSE
          Length = 199

 Score =  185 bits (469), Expect = 2e-47,   Method: Compositional matrix adjust.
 Identities = 102/177 (57%), Positives = 120/177 (67%), Gaps = 7/177 (3%)

Query: 1   MACTIDFRCLDEGFGGKTYKRKREA--QSLAATGDVDGSMEIDGETLPPAAKRSAVASIE 58
           MACT+DFRCLDEGFGGKTYKRKRE+  Q+ A     + SM+IDG   PPAAKRSAVAS E
Sbjct: 1   MACTVDFRCLDEGFGGKTYKRKRESQEQAAAEAIADEASMDIDG--APPAAKRSAVASSE 58

Query: 59  NPDKPV---FGQPTYDGVIGGKVSGRKWKQARKQRASAKLVSIKGTTFEERERQKEIKRA 115
           NPDKP+     +PTYDGVI GKVSGR WKQ R  R+S + V  +    EE +RQ+EIK+A
Sbjct: 59  NPDKPIALAVERPTYDGVIAGKVSGRNWKQPRTHRSSGRFVKNRKPDLEEMKRQREIKKA 118

Query: 116 YRERMNELKDXXXXXXXXXXXXXXXXXXXXXXXXLRSGTKLQKITNPKTLKKIAKSK 172
           Y+ER+NELK+                        LR+GTKLQKITNPKTLKKI+ SK
Sbjct: 119 YKERVNELKEEIRSNKVEKRKKKEEREKRKKENVLRTGTKLQKITNPKTLKKISMSK 175