Jatropha Genome Database

JcCB0176391.10
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCB0176391.10 - phase: 0 /partial
         (348 letters)

Database: TAIR9_pep 
           33,410 sequences; 13,434,913 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT5G08170.1 | Symbols: EMB1873, ATAIH | EMB1873 (EMBRYO DEFECTIV...   551   e-157

>AT5G08170.1 | Symbols: EMB1873, ATAIH | EMB1873 (EMBRYO DEFECTIVE
           1873); agmatine deiminase | chr5:2628663-2631047 REVERSE
          Length = 383

 Score =  551 bits (1419), Expect = e-157,   Method: Compositional matrix adjust.
 Identities = 260/350 (74%), Positives = 295/350 (84%), Gaps = 3/350 (0%)

Query: 1   ERPDNWRDNAVHAQHVFAKVATAISKFEPVTVCASASQWEKARSLLPEHIRVVEMSMNDS 60
           ER DNWR NA+ AQ VFA VA AISKFEPVTVCAS +QWE AR  LPE IRVVEMSMNDS
Sbjct: 31  ERQDNWRHNALPAQRVFADVAKAISKFEPVTVCASPAQWENARKQLPEDIRVVEMSMNDS 90

Query: 61  WFRDTGPTFVVNAS--NSSSPGQKVAGIDWKFNSWGGVDDGCYQDWSLDLLVARKILQIE 118
           WFRD+GPTF+V       SS  + +AGIDW FN+WGG +DGCY DWS DLLV+RKIL +E
Sbjct: 91  WFRDSGPTFIVRKRPVKLSSLNRNIAGIDWNFNAWGGANDGCYNDWSHDLLVSRKILALE 150

Query: 119 KLPRFPHFMILEGGSIHVDGEGTCLTTEECLLNKNRNPHLTKEQIENQLKEYLGVQKVIW 178
           ++PRF H MILEGGSIHVDGEGTCL TEECLLNKNRNPH++KEQIE +LK+YLGVQ  IW
Sbjct: 151 RIPRFQHSMILEGGSIHVDGEGTCLVTEECLLNKNRNPHMSKEQIEEELKKYLGVQSFIW 210

Query: 179 LPRGLYGDDDTNGHIDNMCCFVRPGVVLLSWVDDKKDPQFARSTEALFVLSNTTDAKGRK 238
           LPRGLYGD+DTNGHIDNMCCF RPGVVLLSW DD+ DPQ+ RS EAL VLSN+ DA+GRK
Sbjct: 211 LPRGLYGDEDTNGHIDNMCCFARPGVVLLSWTDDETDPQYERSVEALSVLSNSIDARGRK 270

Query: 239 LQIIKIHVPGPLYMTDEEAAGVIQDGEAKPRLPGTRLAASYVNFYIANGGIITPQFGDQE 298
           +Q+IK+++P PLYMT+EE++G+ QDGEA PRL GTRLAASYVNFYIANGGII PQFGD  
Sbjct: 271 IQVIKLYIPEPLYMTEEESSGITQDGEAIPRLAGTRLAASYVNFYIANGGIIAPQFGDPI 330

Query: 299 RDDEAVRVLSQAFPNHEVVRIEGAREIVLGGGNIHCITQQQPAAAPSNLA 348
           RD EA+RVLS  FP+H VV IE AREIVL GGNIHCITQQQP A P+++A
Sbjct: 331 RDKEAIRVLSDTFPHHSVVGIENAREIVLAGGNIHCITQQQP-AEPTSVA 379