Jatropha Genome Database

JcCB0175951.10
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCB0175951.10 + phase: 1 /partial
         (514 letters)

Database: TAIR9_pep 
           33,410 sequences; 13,434,913 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT1G76490.1 | Symbols: HMG1, HMGR1 | HMG1 (HYDROXY METHYLGLUTARY...   810   0.0  
AT2G17370.1 | Symbols: HMG2, HMGR2 | HMG2 (3-HYDROXY-3-METHYLGLU...   735   0.0  

>AT1G76490.1 | Symbols: HMG1, HMGR1 | HMG1 (HYDROXY METHYLGLUTARYL
           COA REDUCTASE 1); hydroxymethylglutaryl-CoA reductase |
           chr1:28695801-28698206 FORWARD
          Length = 642

 Score =  810 bits (2091), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 389/512 (75%), Positives = 451/512 (88%), Gaps = 4/512 (0%)

Query: 1   YFLLHRWREKIRNSTPLHIVNFPEIAALVCLVASVIYLLGFFGIGFVHSFTSKVSTDAWE 60
           Y+LLHRWR+KIR +TPLH+V   E+ A++ L+AS IYLLGFFGI FV SF S+ S DAW+
Sbjct: 121 YYLLHRWRDKIRYNTPLHVVTITELGAIIALIASFIYLLGFFGIDFVQSFISRASGDAWD 180

Query: 61  IEEYDVVKKD---TRSPGPCAASLDCSVHPTTKIAPIPLSDDDEQIINSVVSGSIPSYSL 117
           + +          T SP     S+    +P   I    L ++DE+I+ SV+ G IPSYSL
Sbjct: 181 LADTIDDDDHRLVTCSPPTPIVSVAKLPNPE-PIVTESLPEEDEEIVKSVIDGVIPSYSL 239

Query: 118 ESKLGDCRRAAAIRRESLQRMTGRSLEGLPLDGFDYESILGQCCEMPIGYVQIPVGIAGP 177
           ES+LGDC+RAA+IRRE+LQR+TGRS+EGLPLDGFDYESILGQCCEMP+GY+QIPVGIAGP
Sbjct: 240 ESRLGDCKRAASIRREALQRVTGRSIEGLPLDGFDYESILGQCCEMPVGYIQIPVGIAGP 299

Query: 178 LLLDGIEYTVPMATTEGCLVASTNRGCKAIYVSGGATSTLFRDGMTRAPVVRFPTAKRAS 237
           LLLDG EY+VPMATTEGCLVASTNRGCKA+++SGGATST+ +DGMTRAPVVRF +A+RAS
Sbjct: 300 LLLDGYEYSVPMATTEGCLVASTNRGCKAMFISGGATSTVLKDGMTRAPVVRFASARRAS 359

Query: 238 DLKFFIEDPTSFDTIAVVFNKSSRFAKLQGVKCAIAGKNLYMRFNCNTGDAMGMNMVSKG 297
           +LKFF+E+P +FDT+AVVFN+SSRFA+LQ VKC IAGKN Y+RF C+TGDAMGMNMVSKG
Sbjct: 360 ELKFFLENPENFDTLAVVFNRSSRFARLQSVKCTIAGKNAYVRFCCSTGDAMGMNMVSKG 419

Query: 298 VQNVLDYLRDDFPDMDVIGISGNFCSDKKPAAVNWIEGRGKSVVCEAIIKEEVVRKVLKT 357
           VQNVL+YL DDFPDMDVIGISGNFCSDKKPAAVNWIEGRGKSVVCEA+I+ E+V KVLKT
Sbjct: 420 VQNVLEYLTDDFPDMDVIGISGNFCSDKKPAAVNWIEGRGKSVVCEAVIRGEIVNKVLKT 479

Query: 358 NVAALVELNMLKNLTGSAVAGALGGFNAHASNIVTAVYIATGQDPAQNVESSHCITMMEA 417
           +VAALVELNMLKNL GSAVAG+LGGFNAHASNIV+AV+IATGQDPAQNVESS CITMMEA
Sbjct: 480 SVAALVELNMLKNLAGSAVAGSLGGFNAHASNIVSAVFIATGQDPAQNVESSQCITMMEA 539

Query: 418 VNDGKDLHISVTMPSIEVGTVGGGTQLASQSACLNLLGVKGASKELPGSNSRLLASIVAG 477
           +NDGKD+HISVTMPSIEVGTVGGGTQLASQSACLNLLGVKGAS E PG N+R LA+IVAG
Sbjct: 540 INDGKDIHISVTMPSIEVGTVGGGTQLASQSACLNLLGVKGASTESPGMNARRLATIVAG 599

Query: 478 SVLAGELSLMSALAAGQLVKSHMRYNRSSKDV 509
           +VLAGELSLMSA+AAGQLV+SHM+YNRSS+D+
Sbjct: 600 AVLAGELSLMSAIAAGQLVRSHMKYNRSSRDI 631


>AT2G17370.1 | Symbols: HMG2, HMGR2 | HMG2
           (3-HYDROXY-3-METHYLGLUTARYL-COA REDUCTASE 2);
           hydroxymethylglutaryl-CoA reductase |
           chr2:7550007-7551981 FORWARD
          Length = 562

 Score =  735 bits (1898), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 359/516 (69%), Positives = 429/516 (83%), Gaps = 21/516 (4%)

Query: 1   YFLLHRWREKIRNSTPLHIVNFPEIAALVCLVASVIYLLGFFGIGFVHSFTSKVSTDAWE 60
           YFLL RWREKIRNSTPLH+V+  EI AL+  VAS IYLLGF GI  +  F S    D W 
Sbjct: 53  YFLLSRWREKIRNSTPLHVVDLSEICALIGFVASFIYLLGFCGIDLI--FRSSSDDDVW- 109

Query: 61  IEEYDVVKKDTRSPGPCAASLDCS----VHPTTKIAPIPLSDD---DEQIINSVVSGSIP 113
           + +  +         PC  SLDC     + P +   P     D   DE+I+  V+ G+IP
Sbjct: 110 VNDGMI---------PCNQSLDCREVLPIKPNSVDPPRESELDSVEDEEIVKLVIDGTIP 160

Query: 114 SYSLESKLGDCRRAAAIRRESLQRMTGRSLEGLPLDGFDYESILGQCCEMPIGYVQIPVG 173
           SYSLE+KLGDC+RAAAIRRE++QR+TG+SL GLPL+GFDY SILGQCCEMP+GYVQIPVG
Sbjct: 161 SYSLETKLGDCKRAAAIRREAVQRITGKSLTGLPLEGFDYNSILGQCCEMPVGYVQIPVG 220

Query: 174 IAGPLLLDGIEYTVPMATTEGCLVASTNRGCKAIYVSGGATSTLFRDGMTRAPVVRFPTA 233
           IAGPLLLDG+EY+VPMATTEGCLVASTNRG KAI++SGGA S L +D MTRAPVVRFP+A
Sbjct: 221 IAGPLLLDGVEYSVPMATTEGCLVASTNRGFKAIHLSGGAFSVLVKDAMTRAPVVRFPSA 280

Query: 234 KRASDLKFFIEDPTSFDTIAVVFNKSSRFAKLQGVKCAIAGKNLYMRFNCNTGDAMGMNM 293
           +RA+ + F+++DP++F+ ++++FNKSSRFA+LQ + C IAG+NLY RF C+TGDAMGMNM
Sbjct: 281 RRAALVMFYLQDPSNFERLSLIFNKSSRFARLQSITCTIAGRNLYPRFACSTGDAMGMNM 340

Query: 294 VSKGVQNVLDYLRDDFPDMDVIGISGNFCSDKKPAAVNWIEGRGKSVVCEAIIKEEVVRK 353
           VSKGVQNVLD+++ +FPDMDVIGISGN+CSDKK +AVNWIEGRGK VVCEA IK E+V K
Sbjct: 341 VSKGVQNVLDFVKSEFPDMDVIGISGNYCSDKKASAVNWIEGRGKHVVCEAFIKAEIVEK 400

Query: 354 VLKTNVAALVELNMLKNLTGSAVAGALGGFNAHASNIVTAVYIATGQDPAQNVESSHCIT 413
           VLKT+V ALVELN LKNL GSA+AG+LGGFNAH+SNIV+AV+IATGQDPAQNVESSHC+T
Sbjct: 401 VLKTSVEALVELNTLKNLVGSAMAGSLGGFNAHSSNIVSAVFIATGQDPAQNVESSHCMT 460

Query: 414 MMEAVNDGKDLHISVTMPSIEVGTVGGGTQLASQSACLNLLGVKGASKELPGSNSRLLAS 473
           M+  + DG DLHISV+MP IEVGTVGGGTQLASQ+ACLNLLGVKG++ E PGSN++ LA 
Sbjct: 461 MI--LPDGDDLHISVSMPCIEVGTVGGGTQLASQAACLNLLGVKGSNNEKPGSNAQQLAR 518

Query: 474 IVAGSVLAGELSLMSALAAGQLVKSHMRYNRSSKDV 509
           IVAGSVLAGELSLMSA+AAGQLVKSHM+YNRSS+D+
Sbjct: 519 IVAGSVLAGELSLMSAIAAGQLVKSHMKYNRSSRDI 554