Jatropha Genome Database

JcCB0175111.10
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCB0175111.10 + phase: 0 /partial
         (129 letters)

Database: TAIR9_pep 
           33,410 sequences; 13,434,913 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT1G30670.1 | Symbols:  | basic helix-loop-helix (bHLH) family p...    93   4e-20
AT2G34820.1 | Symbols:  | basic helix-loop-helix (bHLH) family p...    85   9e-18
AT3G21330.1 | Symbols:  | basic helix-loop-helix (bHLH) family p...    63   4e-11
AT5G01310.1 | Symbols:  | basic helix-loop-helix (bHLH) family p...    62   1e-10
AT4G00120.1 | Symbols: IND1, GT140, IND, EDA33 | IND (INDEHISCEN...    62   1e-10
AT1G66470.1 | Symbols:  | basic helix-loop-helix (bHLH) family p...    55   1e-08
AT5G37800.1 | Symbols:  | basic helix-loop-helix (bHLH) family p...    54   2e-08
AT3G22100.1 | Symbols:  | basic helix-loop-helix (bHLH) family p...    53   5e-08
AT5G43175.1 | Symbols:  | basic helix-loop-helix (bHLH) family p...    52   7e-08
AT1G27740.1 | Symbols:  | basic helix-loop-helix (bHLH) family p...    52   8e-08
AT5G09750.1 | Symbols: HEC3 | HEC3 (HECATE 3); DNA binding / tra...    52   1e-07
AT2G14760.1 | Symbols:  | basic helix-loop-helix protein / bHLH ...    51   2e-07
AT4G33880.1 | Symbols:  | basic helix-loop-helix (bHLH) family p...    50   3e-07
AT5G67060.1 | Symbols: HEC1 | HEC1 (HECATE 1); transcription fac...    50   3e-07
AT3G50330.1 | Symbols: HEC2 | HEC2 (HECATE 2); DNA binding / tra...    50   4e-07
AT4G37850.1 | Symbols:  | basic helix-loop-helix (bHLH) family p...    48   2e-06
AT4G30980.1 | Symbols:  | basic helix-loop-helix (bHLH) family p...    46   8e-06

>AT1G30670.1 | Symbols:  | basic helix-loop-helix (bHLH) family
           protein | chr1:10879311-10880188 REVERSE
          Length = 264

 Score = 93.2 bits (230), Expect = 4e-20,   Method: Compositional matrix adjust.
 Identities = 59/118 (50%), Positives = 80/118 (67%), Gaps = 3/118 (2%)

Query: 6   RSVSAQSIAARERRRKITDKTQLLGRLIPGGSKMNTAEMLQAAYKYVKYLQAQLGVLRFL 65
           R +SAQSIAAR+RRR+IT+KTQ LG+LIPG  K NTAEM  AA KYVK+LQAQ+ +L+  
Sbjct: 134 RELSAQSIAARKRRRRITEKTQELGKLIPGSQKHNTAEMFNAAAKYVKFLQAQIEILQLK 193

Query: 66  FGSSQL--KAKDIKELQ-ILGSASFQEKLYMQEKCLVPNEIALILTNNQDVNSDTSIS 120
               Q    +K  +E+Q +LGS   QEKL  +E C+VP E+  +L   + + ++  IS
Sbjct: 194 QTKMQTLDSSKVGREMQFLLGSQEIQEKLSTEEVCVVPREMVQVLKAEECILTNPKIS 251


>AT2G34820.1 | Symbols:  | basic helix-loop-helix (bHLH) family
           protein | chr2:14689632-14690594 FORWARD
          Length = 291

 Score = 85.1 bits (209), Expect = 9e-18,   Method: Compositional matrix adjust.
 Identities = 56/115 (48%), Positives = 80/115 (69%), Gaps = 1/115 (0%)

Query: 7   SVSAQSIAARERRRKITDKTQLLGRLIPGGSKMNTAEMLQAAYKYVKYLQAQLGVLRFLF 66
           ++S+QSIAAR RRR+I +KT  LG+LIPGG+K+NTAEM QAA KYVK+LQ+Q+G+L+ + 
Sbjct: 164 TLSSQSIAARGRRRRIAEKTHELGKLIPGGNKLNTAEMFQAAAKYVKFLQSQVGILQLMQ 223

Query: 67  GSSQLKAKDIKELQ-ILGSASFQEKLYMQEKCLVPNEIALILTNNQDVNSDTSIS 120
            + +  +    E Q +L S + QEKL  +E CLVP E+   LT  + +    +IS
Sbjct: 224 TTKKGSSNVQMETQYLLESQAIQEKLSTEEVCLVPCEMVQDLTTEETICRTPNIS 278


>AT3G21330.1 | Symbols:  | basic helix-loop-helix (bHLH) family
           protein | chr3:7507720-7508841 FORWARD
          Length = 373

 Score = 63.2 bits (152), Expect = 4e-11,   Method: Compositional matrix adjust.
 Identities = 28/59 (47%), Positives = 43/59 (72%)

Query: 7   SVSAQSIAARERRRKITDKTQLLGRLIPGGSKMNTAEMLQAAYKYVKYLQAQLGVLRFL 65
           S   Q++AAR+RR +I++K ++L  L+PGG+KM+TA ML  A  Y+K+L+AQ+  L  L
Sbjct: 276 STDPQTVAARQRRERISEKIRVLQTLVPGGTKMDTASMLDEAANYLKFLRAQVKALENL 334


>AT5G01310.1 | Symbols:  | basic helix-loop-helix (bHLH) family
          protein | chr5:125304-128960 FORWARD
          Length = 912

 Score = 62.0 bits (149), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 26/53 (49%), Positives = 40/53 (75%)

Query: 7  SVSAQSIAARERRRKITDKTQLLGRLIPGGSKMNTAEMLQAAYKYVKYLQAQL 59
          S   QS+AAR+RR +I+D+ ++L  ++PGG+KM+T  ML  A  YVK+L+AQ+
Sbjct: 44 STDPQSVAARDRRHRISDRFKILQSMVPGGAKMDTVSMLDEAISYVKFLKAQI 96


>AT4G00120.1 | Symbols: IND1, GT140, IND, EDA33 | IND (INDEHISCENT);
           DNA binding / transcription factor | chr4:42601-43197
           REVERSE
          Length = 198

 Score = 61.6 bits (148), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 29/67 (43%), Positives = 45/67 (67%), Gaps = 3/67 (4%)

Query: 7   SVSAQSIAARERRRKITDKTQLLGRLIPGGSKMNTAEMLQAAYKYVKYLQAQLGVLRFLF 66
           S   Q++ AR RR +I++K ++L R++PGG+KM+TA ML  A +Y K+L+ Q   +R L 
Sbjct: 119 SDDPQTVVARRRRERISEKIRILKRIVPGGAKMDTASMLDEAIRYTKFLKRQ---VRILQ 175

Query: 67  GSSQLKA 73
             SQ+ A
Sbjct: 176 PHSQIGA 182


>AT1G66470.1 | Symbols:  | basic helix-loop-helix (bHLH) family
           protein | chr1:24795326-24796598 FORWARD
          Length = 298

 Score = 54.7 bits (130), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 27/73 (36%), Positives = 47/73 (64%), Gaps = 2/73 (2%)

Query: 10  AQSIAARERRRKITDKTQLLGRLIPGGSKMNTAEMLQAAYKYVKYLQAQLGVLRF--LFG 67
            QS+AA+ RR +I+++ ++L  L+P G+K++   ML+ A  YVK+LQ Q+ VL     + 
Sbjct: 205 PQSLAAKNRRERISERLKILQELVPNGTKVDLVTMLEKAISYVKFLQVQVKVLATDEFWP 264

Query: 68  SSQLKAKDIKELQ 80
           +   KA DI +++
Sbjct: 265 AQGGKAPDISQVK 277


>AT5G37800.1 | Symbols:  | basic helix-loop-helix (bHLH) family
           protein | chr5:15036197-15037574 FORWARD
          Length = 307

 Score = 53.9 bits (128), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 27/73 (36%), Positives = 47/73 (64%), Gaps = 2/73 (2%)

Query: 10  AQSIAARERRRKITDKTQLLGRLIPGGSKMNTAEMLQAAYKYVKYLQAQLGVLRF--LFG 67
            QS+AA+ RR +I+++ ++L  L+P G+K++   ML+ A  YVK+LQ Q+ VL     + 
Sbjct: 211 PQSLAAKNRRERISERLKVLQELVPNGTKVDLVTMLEKAIGYVKFLQVQVKVLAADEFWP 270

Query: 68  SSQLKAKDIKELQ 80
           +   KA DI +++
Sbjct: 271 AQGGKAPDISQVK 283


>AT3G22100.1 | Symbols:  | basic helix-loop-helix (bHLH) family
           protein | chr3:7783711-7784469 REVERSE
          Length = 252

 Score = 53.1 bits (126), Expect = 5e-08,   Method: Compositional matrix adjust.
 Identities = 29/75 (38%), Positives = 48/75 (64%), Gaps = 1/75 (1%)

Query: 18  RRRKITDKTQLLGRLIPGGSKMNTAEMLQAAYKYVKYLQAQLGVLRFL-FGSSQLKAKDI 76
           +RRKI+DK + L +L+P   KMN A  L+ ++KY+K+LQ+Q+  LR++   S    A ++
Sbjct: 142 KRRKISDKIRSLEKLMPWERKMNLAMTLEESHKYIKFLQSQIASLRWMPLESVYNTAGEV 201

Query: 77  KELQILGSASFQEKL 91
            E  +L S + Q+ L
Sbjct: 202 GETDLLKSLTRQQIL 216


>AT5G43175.1 | Symbols:  | basic helix-loop-helix (bHLH) family
           protein | chr5:17334261-17335234 FORWARD
          Length = 223

 Score = 52.4 bits (124), Expect = 7e-08,   Method: Compositional matrix adjust.
 Identities = 23/53 (43%), Positives = 37/53 (69%)

Query: 10  AQSIAARERRRKITDKTQLLGRLIPGGSKMNTAEMLQAAYKYVKYLQAQLGVL 62
            QS+ AR+RR +I D+ + L  L+P G+K++ + ML+ A  YVK+LQ Q+ +L
Sbjct: 142 PQSLYARKRRERINDRLKTLQSLVPNGTKVDISTMLEDAVHYVKFLQLQIKLL 194


>AT1G27740.1 | Symbols:  | basic helix-loop-helix (bHLH) family
           protein | chr1:9654753-9655806 FORWARD
          Length = 258

 Score = 52.4 bits (124), Expect = 8e-08,   Method: Compositional matrix adjust.
 Identities = 23/56 (41%), Positives = 38/56 (67%)

Query: 7   SVSAQSIAARERRRKITDKTQLLGRLIPGGSKMNTAEMLQAAYKYVKYLQAQLGVL 62
           +   QS+ AR+RR KI ++ + L  L+P G+K++ + ML+ A  YVK+LQ Q+ +L
Sbjct: 174 ATDPQSLYARKRREKINERLKTLQNLVPNGTKVDISTMLEEAVHYVKFLQLQIKLL 229


>AT5G09750.1 | Symbols: HEC3 | HEC3 (HECATE 3); DNA binding /
           transcription factor | chr5:3026401-3027075 REVERSE
          Length = 224

 Score = 51.6 bits (122), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 30/69 (43%), Positives = 47/69 (68%)

Query: 7   SVSAQSIAARERRRKITDKTQLLGRLIPGGSKMNTAEMLQAAYKYVKYLQAQLGVLRFLF 66
           S   QS+AAR RR +I+++ ++L RL+PGG+KM+TA ML  A +YVK+L+ Q+ +L    
Sbjct: 126 SDDPQSVAARHRRERISERIRILQRLVPGGTKMDTASMLDEAIRYVKFLKRQIRLLNNNT 185

Query: 67  GSSQLKAKD 75
           G +    +D
Sbjct: 186 GYTPPPPQD 194


>AT2G14760.1 | Symbols:  | basic helix-loop-helix protein / bHLH
           protein | chr2:6321840-6323312 REVERSE
          Length = 328

 Score = 50.8 bits (120), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 22/56 (39%), Positives = 40/56 (71%)

Query: 7   SVSAQSIAARERRRKITDKTQLLGRLIPGGSKMNTAEMLQAAYKYVKYLQAQLGVL 62
           +   QS+ AR+RR +I ++ ++L  L+P G+K++ + ML+ A +YVK+LQ Q+ +L
Sbjct: 244 ATDPQSLYARKRRERINERLRILQHLVPNGTKVDISTMLEEAVQYVKFLQLQIKLL 299


>AT4G33880.1 | Symbols:  | basic helix-loop-helix (bHLH) family
           protein | chr4:16239566-16241052 REVERSE
          Length = 352

 Score = 50.4 bits (119), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 22/56 (39%), Positives = 39/56 (69%)

Query: 7   SVSAQSIAARERRRKITDKTQLLGRLIPGGSKMNTAEMLQAAYKYVKYLQAQLGVL 62
           +   QS+ AR+RR +I ++ ++L  L+P G+K++ + ML+ A  YVK+LQ Q+ +L
Sbjct: 273 ATDPQSLYARKRRERINERLRILQNLVPNGTKVDISTMLEEAVHYVKFLQLQIKLL 328


>AT5G67060.1 | Symbols: HEC1 | HEC1 (HECATE 1); transcription factor
           | chr5:26766276-26767001 FORWARD
          Length = 241

 Score = 50.1 bits (118), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 28/56 (50%), Positives = 41/56 (73%)

Query: 7   SVSAQSIAARERRRKITDKTQLLGRLIPGGSKMNTAEMLQAAYKYVKYLQAQLGVL 62
           S   QS+AAR RR +I+++ ++L RL+PGG+KM+TA ML  A  YVK+L+ Q+  L
Sbjct: 129 SKDPQSVAARHRRERISERIRILQRLVPGGTKMDTASMLDEAIHYVKFLKKQVQSL 184


>AT3G50330.1 | Symbols: HEC2 | HEC2 (HECATE 2); DNA binding /
           transcription factor | chr3:18657423-18658118 REVERSE
          Length = 231

 Score = 50.1 bits (118), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 27/53 (50%), Positives = 40/53 (75%)

Query: 7   SVSAQSIAARERRRKITDKTQLLGRLIPGGSKMNTAEMLQAAYKYVKYLQAQL 59
           S   QS+AAR RR +I+++ ++L RL+PGG+KM+TA ML  A  YVK+L+ Q+
Sbjct: 126 SKDPQSVAARHRRERISERIRILQRLVPGGTKMDTASMLDEAIHYVKFLKKQV 178


>AT4G37850.1 | Symbols:  | basic helix-loop-helix (bHLH) family
           protein | chr4:17796362-17797647 REVERSE
          Length = 328

 Score = 47.8 bits (112), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 23/50 (46%), Positives = 33/50 (66%)

Query: 13  IAARERRRKITDKTQLLGRLIPGGSKMNTAEMLQAAYKYVKYLQAQLGVL 62
           IA R+RR K+T +   L  L+PG  KM+ A +L  A K++KYLQ ++G L
Sbjct: 155 IAERKRREKLTQRFVALSALVPGLKKMDKASVLGDALKHIKYLQERVGEL 204


>AT4G30980.1 | Symbols:  | basic helix-loop-helix (bHLH) family
           protein | chr4:15079489-15081606 REVERSE
          Length = 310

 Score = 45.8 bits (107), Expect = 8e-06,   Method: Compositional matrix adjust.
 Identities = 23/57 (40%), Positives = 34/57 (59%)

Query: 6   RSVSAQSIAARERRRKITDKTQLLGRLIPGGSKMNTAEMLQAAYKYVKYLQAQLGVL 62
           ++    SIA R RR +I ++ + L  L+P G+K + A ML     YVK+LQ Q+ VL
Sbjct: 136 QATDPHSIAERLRRERIAERMKSLQELVPNGNKTDKASMLDEIIDYVKFLQLQVKVL 192