Jatropha Genome Database
- JcCB0175021.10
BLASTP 2.2.23 [Feb-03-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= JcCB0175021.10 + phase: 0 /pseudo
(131 letters)
Database: TAIR9_pep
33,410 sequences; 13,434,913 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AT1G70210.1 | Symbols: CYCD1;1 | CYCD1;1 (CYCLIN D1;1); cyclin-d... 142 4e-35
AT2G22490.1 | Symbols: CYCD2;1, ATCYCD2;1 | CYCD2;1 (Cyclin D2;1... 68 1e-12
AT5G10440.1 | Symbols: CYCD4;2 | CYCD4;2 (cyclin d4;2); cyclin-d... 58 1e-09
AT5G65420.1 | Symbols: CYCD4;1 | CYCD4;1 (CYCLIN D4;1); cyclin-d... 58 2e-09
AT1G77390.1 | Symbols: CYCA1;2, CYCA1 | CYCA1;2 (CYCLIN A1;2); c... 51 3e-07
AT3G50070.1 | Symbols: CYCD3;3 | CYCD3;3 (CYCLIN D3;3); cyclin-d... 49 7e-07
AT5G67260.1 | Symbols: CYCD3;2 | CYCD3;2 (CYCLIN D3;2); cyclin-d... 49 1e-06
AT4G34160.1 | Symbols: CYCD3;1, CYCD3 | CYCD3;1 (CYCLIN D3;1); c... 46 6e-06
>AT1G70210.1 | Symbols: CYCD1;1 | CYCD1;1 (CYCLIN D1;1);
cyclin-dependent protein kinase regulator |
chr1:26440015-26441980 FORWARD
Length = 339
Score = 142 bits (359), Expect = 4e-35, Method: Compositional matrix adjust.
Identities = 72/101 (71%), Positives = 83/101 (82%), Gaps = 1/101 (0%)
Query: 11 DLLCSEDSSEIFSAESPECSSDLESPAFIEESIASFIEDERNFVPGFDYLSRFQSRSLDA 70
DL C EDS +FS ES S E ++ +SIA FIEDER+FVPG DYLSRFQ+RSLDA
Sbjct: 21 DLFCGEDSG-VFSGESTVDFSSSEVDSWPGDSIACFIEDERHFVPGHDYLSRFQTRSLDA 79
Query: 71 SAREESVAWILKVQAYYSFQPLTAYLSVNYLDRFLYSRPLP 111
SARE+SVAWILKVQAYY+FQPLTAYL+VNY+DRFLY+R LP
Sbjct: 80 SAREDSVAWILKVQAYYNFQPLTAYLAVNYMDRFLYARRLP 120
>AT2G22490.1 | Symbols: CYCD2;1, ATCYCD2;1 | CYCD2;1 (Cyclin D2;1);
cyclin-dependent protein kinase regulator/ protein
binding | chr2:9554157-9555873 REVERSE
Length = 361
Score = 68.2 bits (165), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 35/72 (48%), Positives = 43/72 (59%)
Query: 40 EESIASFIEDERNFVPGFDYLSRFQSRSLDASAREESVAWILKVQAYYSFQPLTAYLSVN 99
E+ I + E F PG DY+ R S LD S R +++ WILKV A+Y F L LS+N
Sbjct: 64 EDRIKEMLVREIEFCPGTDYVKRLLSGDLDLSVRNQALDWILKVCAHYHFGHLCICLSMN 123
Query: 100 YLDRFLYSRPLP 111
YLDRFL S LP
Sbjct: 124 YLDRFLTSYELP 135
>AT5G10440.1 | Symbols: CYCD4;2 | CYCD4;2 (cyclin d4;2);
cyclin-dependent protein kinase | chr5:3280611-3282342
REVERSE
Length = 298
Score = 58.2 bits (139), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 38/97 (39%), Positives = 48/97 (49%), Gaps = 9/97 (9%)
Query: 15 SEDSSEIFSAESPECSSDLESPAFIEESIASFIEDERNFVPGFDYLSRFQSRSLDASARE 74
S D+ IF P LES EE + IE ER P DYL R ++ LD + R
Sbjct: 20 SVDTRSIFQMGFP-----LES----EEIVREMIEKERQHSPRDDYLKRLRNGDLDFNVRI 70
Query: 75 ESVAWILKVQAYYSFQPLTAYLSVNYLDRFLYSRPLP 111
+++ WI K F PL L++NYLDRFL LP
Sbjct: 71 QALGWIWKACEELQFGPLCICLAMNYLDRFLSVHDLP 107
>AT5G65420.1 | Symbols: CYCD4;1 | CYCD4;1 (CYCLIN D4;1);
cyclin-dependent protein kinase regulator |
chr5:26141592-26143750 REVERSE
Length = 308
Score = 58.2 bits (139), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 29/73 (39%), Positives = 41/73 (56%), Gaps = 1/73 (1%)
Query: 40 EESIASFIEDERNFVPGFDYLSRFQSRSLDAS-AREESVAWILKVQAYYSFQPLTAYLSV 98
EE I +E E+ +P DY+ R +S LD + R +++ WI K + F PL L++
Sbjct: 44 EEIIMEMVEKEKQHLPSDDYIKRLRSGDLDLNVGRRDALNWIWKACEVHQFGPLCFCLAM 103
Query: 99 NYLDRFLYSRPLP 111
NYLDRFL LP
Sbjct: 104 NYLDRFLSVHDLP 116
>AT1G77390.1 | Symbols: CYCA1;2, CYCA1 | CYCA1;2 (CYCLIN A1;2);
cyclin-dependent protein kinase regulator |
chr1:29081904-29084137 REVERSE
Length = 442
Score = 50.8 bits (120), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 25/56 (44%), Positives = 35/56 (62%), Gaps = 1/56 (1%)
Query: 50 ERNFVPGFDYLSRFQSRSLDASAREESVAWILKVQAYYSFQPLTAYLSVNYLDRFL 105
E N P DY+ R QS S++AS R + W+++V Y P T YL+VNY+DR+L
Sbjct: 190 EVNKRPALDYMERTQS-SINASMRSILIDWLVEVAEEYRLSPETLYLAVNYVDRYL 244
>AT3G50070.1 | Symbols: CYCD3;3 | CYCD3;3 (CYCLIN D3;3);
cyclin-dependent protein kinase | chr3:18565322-18566669
REVERSE
Length = 361
Score = 49.3 bits (116), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 20/36 (55%), Positives = 28/36 (77%)
Query: 73 REESVAWILKVQAYYSFQPLTAYLSVNYLDRFLYSR 108
RE+++ WI KV+++Y F LTA L+VNY DRF+ SR
Sbjct: 86 REKALDWIFKVKSHYGFNSLTALLAVNYFDRFITSR 121
>AT5G67260.1 | Symbols: CYCD3;2 | CYCD3;2 (CYCLIN D3;2);
cyclin-dependent protein kinase | chr5:26836313-26837665
FORWARD
Length = 367
Score = 48.5 bits (114), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 23/51 (45%), Positives = 34/51 (66%), Gaps = 3/51 (5%)
Query: 63 FQSRSLDA---SAREESVAWILKVQAYYSFQPLTAYLSVNYLDRFLYSRPL 110
F + LD S R+E++ W+L+V+++Y F LTA L+VNY DRF+ S L
Sbjct: 83 FGEQILDGFLVSCRKEALDWVLRVKSHYGFTSLTAILAVNYFDRFMTSIKL 133
>AT4G34160.1 | Symbols: CYCD3;1, CYCD3 | CYCD3;1 (CYCLIN D3;1);
cyclin-dependent protein kinase regulator/ protein
binding | chr4:16357903-16359304 FORWARD
Length = 376
Score = 46.2 bits (108), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 19/41 (46%), Positives = 29/41 (70%)
Query: 70 ASAREESVAWILKVQAYYSFQPLTAYLSVNYLDRFLYSRPL 110
++ R+E+V WIL+V A+Y F L A L++ YLD+F+ S L
Sbjct: 84 STDRKEAVGWILRVNAHYGFSTLAAVLAITYLDKFICSYSL 124