Jatropha Genome Database

JcCB0174221.20
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCB0174221.20 - phase: 0 /partial
         (77 letters)

Database: TAIR9_pep 
           33,410 sequences; 13,434,913 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT3G14120.1 | Symbols:  | FUNCTIONS IN: molecular_function unkno...    65   1e-11
AT3G14120.2 | Symbols:  | FUNCTIONS IN: molecular_function unkno...    64   1e-11

>AT3G14120.1 | Symbols:  | FUNCTIONS IN: molecular_function unknown;
            INVOLVED IN: transport; LOCATED IN: nuclear pore;
            EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13
            growth stages; CONTAINS InterPro DOMAIN/s: Nuclear pore
            protein 84/107 (InterPro:IPR007252); Has 207 Blast hits
            to 206 proteins in 78 species: Archae - 0; Bacteria - 0;
            Metazoa - 123; Fungi - 57; Plants - 22; Viruses - 0;
            Other Eukaryotes - 5 (source: NCBI BLink). |
            chr3:4677993-4685455 FORWARD
          Length = 1101

 Score = 64.7 bits (156), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 34/61 (55%), Positives = 39/61 (63%)

Query: 16   QVSVSLMESGNPPEKHDELIELVACPDTGXXXXXXXXXXXXXXXXEREYSICKMELEEGL 75
            QVSVSLMESGNPPE HDELIELVA  +TG                EREY + ++EL+E L
Sbjct: 1039 QVSVSLMESGNPPEDHDELIELVASDETGFLSLFSRQQLQEFMLFEREYRMSQLELQEEL 1098

Query: 76   S 76
            S
Sbjct: 1099 S 1099


>AT3G14120.2 | Symbols:  | FUNCTIONS IN: molecular_function unknown;
            INVOLVED IN: transport; LOCATED IN: nuclear pore;
            EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13
            growth stages; CONTAINS InterPro DOMAIN/s: Nuclear pore
            protein 84/107 (InterPro:IPR007252); Has 207 Blast hits
            to 206 proteins in 78 species: Archae - 0; Bacteria - 0;
            Metazoa - 123; Fungi - 57; Plants - 22; Viruses - 0;
            Other Eukaryotes - 5 (source: NCBI BLink). |
            chr3:4677993-4685455 FORWARD
          Length = 1077

 Score = 64.3 bits (155), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 34/61 (55%), Positives = 39/61 (63%)

Query: 16   QVSVSLMESGNPPEKHDELIELVACPDTGXXXXXXXXXXXXXXXXEREYSICKMELEEGL 75
            QVSVSLMESGNPPE HDELIELVA  +TG                EREY + ++EL+E L
Sbjct: 1015 QVSVSLMESGNPPEDHDELIELVASDETGFLSLFSRQQLQEFMLFEREYRMSQLELQEEL 1074

Query: 76   S 76
            S
Sbjct: 1075 S 1075