Jatropha Genome Database

JcCB0174101.10
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCB0174101.10 - phase: 0 
         (131 letters)

Database: TAIR9_pep 
           33,410 sequences; 13,434,913 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT3G58970.1 | Symbols:  | magnesium transporter CorA-like family...    91   3e-19
AT2G03620.2 | Symbols:  | magnesium transporter CorA-like family...    63   5e-11
AT2G03620.1 | Symbols:  | magnesium transporter CorA-like family...    63   5e-11
AT1G16010.1 | Symbols:  | magnesium transporter CorA-like family...    62   1e-10
AT1G16010.2 | Symbols:  | magnesium transporter CorA-like family...    62   1e-10
AT1G80900.1 | Symbols: ATMGT1, MGT1 | magnesium transporter CorA...    58   2e-09
AT4G28580.1 | Symbols:  | magnesium transporter CorA-like family...    54   2e-08
AT5G64560.2 | Symbols:  | magnesium transporter CorA-like family...    52   1e-07
AT3G19640.1 | Symbols:  | magnesium transporter CorA-like family...    50   3e-07
AT5G64560.1 | Symbols:  | magnesium transporter CorA-like family...    50   4e-07

>AT3G58970.1 | Symbols:  | magnesium transporter CorA-like family
           protein | chr3:21789659-21791163 REVERSE
          Length = 436

 Score = 90.5 bits (223), Expect = 3e-19,   Method: Composition-based stats.
 Identities = 38/50 (76%), Positives = 45/50 (90%)

Query: 75  RLWMRFDKFGNSELMECDKSTIIKRVAIPARDLRILGPVFSHSSNILGKD 124
           RLWMRFD+ G  E++ECDKSTIIKR ++PARDLRILGPVFSHSSNIL ++
Sbjct: 63  RLWMRFDRTGAMEVVECDKSTIIKRASVPARDLRILGPVFSHSSNILARE 112


>AT2G03620.2 | Symbols:  | magnesium transporter CorA-like family
           protein (MRS2-5) | chr2:1100489-1102168 REVERSE
          Length = 421

 Score = 63.2 bits (152), Expect = 5e-11,   Method: Composition-based stats.
 Identities = 25/50 (50%), Positives = 41/50 (82%)

Query: 75  RLWMRFDKFGNSELMECDKSTIIKRVAIPARDLRILGPVFSHSSNILGKD 124
           R W++ D+ GNS ++E DK+TI+KR ++P+RDLR+L P+F + S+ILG++
Sbjct: 49  RSWVKIDQDGNSAVLELDKATIMKRCSLPSRDLRLLDPLFIYPSSILGRE 98


>AT2G03620.1 | Symbols:  | magnesium transporter CorA-like family
           protein (MRS2-5) | chr2:1100489-1102168 REVERSE
          Length = 421

 Score = 63.2 bits (152), Expect = 5e-11,   Method: Composition-based stats.
 Identities = 25/50 (50%), Positives = 41/50 (82%)

Query: 75  RLWMRFDKFGNSELMECDKSTIIKRVAIPARDLRILGPVFSHSSNILGKD 124
           R W++ D+ GNS ++E DK+TI+KR ++P+RDLR+L P+F + S+ILG++
Sbjct: 49  RSWVKIDQDGNSAVLELDKATIMKRCSLPSRDLRLLDPLFIYPSSILGRE 98


>AT1G16010.1 | Symbols:  | magnesium transporter CorA-like family
           protein (MRS2-1) | chr1:5495462-5497082 REVERSE
          Length = 442

 Score = 62.0 bits (149), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 25/50 (50%), Positives = 38/50 (76%)

Query: 75  RLWMRFDKFGNSELMECDKSTIIKRVAIPARDLRILGPVFSHSSNILGKD 124
           R W+R D  GN+++ME DK T+++R  +PARDLR+L P+F + S ILG++
Sbjct: 51  RSWIRVDTSGNTQVMEVDKFTMMRRCDLPARDLRLLDPLFVYPSTILGRE 100


>AT1G16010.2 | Symbols:  | magnesium transporter CorA-like family
           protein (MRS2-1) | chr1:5495462-5497082 REVERSE
          Length = 442

 Score = 62.0 bits (149), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 25/50 (50%), Positives = 38/50 (76%)

Query: 75  RLWMRFDKFGNSELMECDKSTIIKRVAIPARDLRILGPVFSHSSNILGKD 124
           R W+R D  GN+++ME DK T+++R  +PARDLR+L P+F + S ILG++
Sbjct: 51  RSWIRVDTSGNTQVMEVDKFTMMRRCDLPARDLRLLDPLFVYPSTILGRE 100


>AT1G80900.1 | Symbols: ATMGT1, MGT1 | magnesium transporter
           CorA-like family protein (MGT1) (MRS2) |
           chr1:30398289-30399870 REVERSE
          Length = 443

 Score = 58.2 bits (139), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 23/48 (47%), Positives = 36/48 (75%)

Query: 77  WMRFDKFGNSELMECDKSTIIKRVAIPARDLRILGPVFSHSSNILGKD 124
           W+R D   NS+++E DK T+++R  +PARDLR+L P+F + S ILG++
Sbjct: 53  WIRVDTSANSQVIEVDKFTMMRRCDLPARDLRLLDPLFVYPSTILGRE 100


>AT4G28580.1 | Symbols:  | magnesium transporter CorA-like family
           protein (MRS2-6) | chr4:14123489-14125003 FORWARD
          Length = 408

 Score = 53.9 bits (128), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 26/49 (53%), Positives = 34/49 (69%), Gaps = 3/49 (6%)

Query: 76  LWMRFDKFGNSELMECDKSTIIKRVAIPARDLRILGPVFSHSSNILGKD 124
           LW RFD+ G  E+  CDKSTII+R ++ A+DLR     FSHSS IL ++
Sbjct: 54  LWTRFDRTGFMEVAGCDKSTIIERSSVSAKDLR---TAFSHSSKILARE 99


>AT5G64560.2 | Symbols:  | magnesium transporter CorA-like family
           protein (MRS2-2) | chr5:25807163-25809395 REVERSE
          Length = 378

 Score = 51.6 bits (122), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 24/48 (50%), Positives = 30/48 (62%)

Query: 77  WMRFDKFGNSELMECDKSTIIKRVAIPARDLRILGPVFSHSSNILGKD 124
           W   D  G SE ++ DK  I+ RV I ARDLRIL P  S+ S ILG++
Sbjct: 27  WALIDATGQSEPLDVDKYEIMHRVQIHARDLRILDPNLSYPSTILGRE 74


>AT3G19640.1 | Symbols:  | magnesium transporter CorA-like family
           protein (MRS2-3) | chr3:6820969-6823104 FORWARD
          Length = 484

 Score = 50.4 bits (119), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 21/48 (43%), Positives = 32/48 (66%)

Query: 77  WMRFDKFGNSELMECDKSTIIKRVAIPARDLRILGPVFSHSSNILGKD 124
           W+  +  G SE  E  K +I++R  +PARDLRIL P+ S+ S +LG++
Sbjct: 47  WLVLNSSGQSEPKEEGKHSIMRRTGLPARDLRILDPLLSYPSTVLGRE 94


>AT5G64560.1 | Symbols:  | magnesium transporter CorA-like family
           protein (MRS2-2) | chr5:25807025-25809395 REVERSE
          Length = 394

 Score = 50.1 bits (118), Expect = 4e-07,   Method: Composition-based stats.
 Identities = 24/48 (50%), Positives = 30/48 (62%)

Query: 77  WMRFDKFGNSELMECDKSTIIKRVAIPARDLRILGPVFSHSSNILGKD 124
           W   D  G SE ++ DK  I+ RV I ARDLRIL P  S+ S ILG++
Sbjct: 27  WALIDATGQSEPLDVDKYEIMHRVQIHARDLRILDPNLSYPSTILGRE 74