Jatropha Genome Database

JcCB0174071.10
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCB0174071.10 - phase: 0 /pseudo
         (158 letters)

Database: TAIR9_pep 
           33,410 sequences; 13,434,913 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT5G11560.1 | Symbols:  | catalytic | chr5:3709734-3713994 REVERSE    206   4e-54

>AT5G11560.1 | Symbols:  | catalytic | chr5:3709734-3713994 REVERSE
          Length = 982

 Score =  206 bits (525), Expect = 4e-54,   Method: Compositional matrix adjust.
 Identities = 100/137 (72%), Positives = 107/137 (78%)

Query: 3   VAIRVXXXXXXXXXXXXXXXXXYEDQVGLMDWHQQYIGKVKDAVFHTQKTGRKRVVVSTE 62
           +AIRV                 YEDQ GL DWHQ+YIGKVK AVFHTQKTGRKRV+VSTE
Sbjct: 1   MAIRVFLTLLLFLSSAILSFSLYEDQAGLTDWHQRYIGKVKHAVFHTQKTGRKRVIVSTE 60

Query: 63  ENVIASLDLRHGEIFWRHVLGTDDVIDGIDIALGKYVITLSSEGSILRAWNLPDGQMVWE 122
           ENV+ASLDLRHGEIFWRHVLGT D IDG+ IALGKYVITLSSEGS LRAWNLPDGQMVWE
Sbjct: 61  ENVVASLDLRHGEIFWRHVLGTKDAIDGVGIALGKYVITLSSEGSTLRAWNLPDGQMVWE 120

Query: 123 SFLQGPNHSKSLLLVPL 139
           + L    HSKSLL VP+
Sbjct: 121 TSLHTAQHSKSLLSVPI 137