Jatropha Genome Database

JcCB0173481.10
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCB0173481.10 - phase: 1 /partial
         (161 letters)

Database: TAIR9_pep 
           33,410 sequences; 13,434,913 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT3G54250.1 | Symbols:  | mevalonate diphosphate decarboxylase, ...   244   2e-65
AT2G38700.1 | Symbols: MVD1, ATMVD1 | MVD1 (MEVALONATE DIPHOSPHA...   239   7e-64

>AT3G54250.1 | Symbols:  | mevalonate diphosphate decarboxylase,
           putative | chr3:20082468-20084688 REVERSE
          Length = 419

 Score =  244 bits (623), Expect = 2e-65,   Method: Compositional matrix adjust.
 Identities = 115/135 (85%), Positives = 123/135 (91%)

Query: 3   FCEWNMGKVEDGSDSRAVQVVDDKHWDDLVIIIAVVSSRQKETSSTTGMRETVETSLLLQ 62
           F +W MG  EDGSDS AVQ+ D+KHWDDLVIIIAVVSSRQKETSST+GMRE+VETSLLLQ
Sbjct: 172 FVKWTMGSKEDGSDSVAVQLADEKHWDDLVIIIAVVSSRQKETSSTSGMRESVETSLLLQ 231

Query: 63  HRAKEVVPKRIIKMEEAIKNRDFASFAQLTCADSNQFHAVCLDTSPPIFYMNDTSHRIIS 122
           HRAKEVVPKRI++MEEAIKNRDFASF QLTC DSNQFHAVCLDTSPPIFYMNDTSHRIIS
Sbjct: 232 HRAKEVVPKRILQMEEAIKNRDFASFTQLTCTDSNQFHAVCLDTSPPIFYMNDTSHRIIS 291

Query: 123 CIEKWNCCEGTPQVG 137
            +EKWN  EGTPQV 
Sbjct: 292 LVEKWNRSEGTPQVA 306


>AT2G38700.1 | Symbols: MVD1, ATMVD1 | MVD1 (MEVALONATE DIPHOSPHATE
           DECARBOXYLASE 1); diphosphomevalonate decarboxylase/
           protein homodimerization | chr2:16180918-16183785
           REVERSE
          Length = 412

 Score =  239 bits (609), Expect = 7e-64,   Method: Compositional matrix adjust.
 Identities = 111/135 (82%), Positives = 123/135 (91%)

Query: 3   FCEWNMGKVEDGSDSRAVQVVDDKHWDDLVIIIAVVSSRQKETSSTTGMRETVETSLLLQ 62
           F +WNMG  EDGSDS AVQ+VDDKHWDDLVIIIAVVSSRQKETSST+GMRE+VETSLLLQ
Sbjct: 172 FVKWNMGNKEDGSDSVAVQLVDDKHWDDLVIIIAVVSSRQKETSSTSGMRESVETSLLLQ 231

Query: 63  HRAKEVVPKRIIKMEEAIKNRDFASFAQLTCADSNQFHAVCLDTSPPIFYMNDTSHRIIS 122
           HRAKEVVP RI++MEEAIKNRDF SF +LTC+DSNQFHAVC+DTSPPIFYMNDTSHRIIS
Sbjct: 232 HRAKEVVPVRILQMEEAIKNRDFTSFTKLTCSDSNQFHAVCMDTSPPIFYMNDTSHRIIS 291

Query: 123 CIEKWNCCEGTPQVG 137
            +EKWN   GTP++ 
Sbjct: 292 LVEKWNRSAGTPEIA 306