Jatropha Genome Database

JcCB0172651.10
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCB0172651.10 + phase: 2 /partial
         (172 letters)

Database: TAIR9_pep 
           33,410 sequences; 13,434,913 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT5G66130.1 | Symbols: ATRAD17, RAD17 | ATRAD17 (ARABIDOPSIS THA...   110   5e-25

>AT5G66130.1 | Symbols: ATRAD17, RAD17 | ATRAD17 (ARABIDOPSIS
           THALIANA RADIATION SENSITIVE) | chr5:26434236-26437091
           FORWARD
          Length = 599

 Score =  110 bits (274), Expect = 5e-25,   Method: Compositional matrix adjust.
 Identities = 66/171 (38%), Positives = 89/171 (52%), Gaps = 12/171 (7%)

Query: 3   IADFLHENVLDFISDEAMDAAKDVAXXXXXXXXXXXXFRGILARYNEXXXXXXXXXXXXX 62
           + DFLHENVLDF+SD A++ A  V+             RG ++ +N              
Sbjct: 440 VVDFLHENVLDFVSDGAIEDAWCVSSYLADADLLLADIRGKMSGHNNTEDVPQSAGASVA 499

Query: 63  XRGVLFGNSHPSPSRWHAIRRPKLWQVEQSLLLNQKETISQRLTVYGGSSFSNMSDVAAE 122
            RGVL+GN  P  SRWH IR+PKLWQVEQS +  +K    QR   Y GS  +++S +A E
Sbjct: 500 VRGVLYGNKQPCSSRWHVIRKPKLWQVEQSSIQTKKNLREQRNISYEGSRVADISVMATE 559

Query: 123 YLPALKSLGDGASGFEAHKVHHKGTWDDSSERMSLDDEEGQIS-DDEIEDW 172
           Y P LK L      + A      G  +++      D+E+  IS DDEI+DW
Sbjct: 560 YSPVLKWL-----SYRASPDAFPGMGEET------DEEDSDISEDDEIQDW 599