Jatropha Genome Database

JcCB0172401.10
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCB0172401.10 - phase: 2 /pseudo/partial
         (166 letters)

Database: TAIR9_pep 
           33,410 sequences; 13,434,913 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT2G26540.1 | Symbols: HEMD | HEMD; uroporphyrinogen-III synthas...   183   5e-47

>AT2G26540.1 | Symbols: HEMD | HEMD; uroporphyrinogen-III synthase |
           chr2:11287666-11290224 REVERSE
          Length = 321

 Score =  183 bits (464), Expect = 5e-47,   Method: Compositional matrix adjust.
 Identities = 93/151 (61%), Positives = 107/151 (70%)

Query: 2   AGSPNVNIGVVGAGTASIFNEVMQSSGQVLDISFTPSKATGKVLASELPKSENKTCTVLY 61
           A SP V IGVVGAGTA +F E M+S+  +L ++FTPSKATGKVLASELP+   K  +VLY
Sbjct: 137 ASSPEVQIGVVGAGTARVFEEAMKSADGLLHVAFTPSKATGKVLASELPEKVGKRSSVLY 196

Query: 62  PASAKASNEIEEGLSNRGFEVVRLNTYTTVPVDHVDQMVLKQXXXXXXXXXXXXXXXXXX 121
           PAS KA N+I EGLS RGFEVVRLNTYTTVPV  VD ++L+Q                  
Sbjct: 197 PASLKAGNDIVEGLSKRGFEVVRLNTYTTVPVQSVDTVLLQQALSAPVLSVASPSAVRAW 256

Query: 122 XNLISESEQWNNSVACIGETTASAARRLGLK 152
            +LI   EQW+N VACIGETTASAARRLGLK
Sbjct: 257 LHLIQNEEQWSNYVACIGETTASAARRLGLK 287