Jatropha Genome Database

JcCB0171941.10
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCB0171941.10 - phase: 0 /pseudo
         (271 letters)

Database: TAIR9_pep 
           33,410 sequences; 13,434,913 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT1G51340.2 | Symbols:  | MATE efflux family protein | chr1:1903...   269   1e-72
AT1G51340.1 | Symbols:  | MATE efflux family protein | chr1:1903...   251   3e-67
AT3G08040.2 | Symbols: FRD3, MAN1 | FRD3 (FERRIC REDUCTASE DEFEC...   206   1e-53
AT3G08040.1 | Symbols: FRD3, MAN1 | FRD3 (FERRIC REDUCTASE DEFEC...   206   1e-53
AT2G38330.1 | Symbols:  | MATE efflux family protein | chr2:1606...   132   2e-31
AT4G38380.1 | Symbols:  | antiporter/ drug transporter | chr4:17...   127   6e-30

>AT1G51340.2 | Symbols:  | MATE efflux family protein |
           chr1:19032021-19034681 FORWARD
          Length = 515

 Score =  269 bits (688), Expect = 1e-72,   Method: Compositional matrix adjust.
 Identities = 152/252 (60%), Positives = 178/252 (70%), Gaps = 13/252 (5%)

Query: 1   MAEED--DASYPSMEKKRIPLCIFFKDFRHVLKMDELGLEXXXXXXXXXXXXXXXXXXXL 58
           M  ED  +  +P     R PL IFF DFR VLK DELGLE                   L
Sbjct: 1   MMSEDGYNTDFP-----RNPLYIFFSDFRSVLKFDELGLEIARIALPAALALTADPIASL 55

Query: 59  VDTAFIGQIGPVELAAVGVSIALFNQVSRIAIFPLVSVTTSFVAEEDTIGSVNPEVQD-S 117
           VDTAFIGQIGPVELAAVGVSIALFNQVSRIAIFPLVS+TTSFVAEED   S    V+D  
Sbjct: 56  VDTAFIGQIGPVELAAVGVSIALFNQVSRIAIFPLVSITTSFVAEEDACSSQQDTVRDHK 115

Query: 118 ESLETGSVVNS---ESKELIPQNVSGEGAYKSKSAMSSFDIAKMESGRRHIPSASSALVI 174
           E +E G  +N+   E+ ELIP+      + + K++ S F I+K  + +R+IPSASSAL+I
Sbjct: 116 ECIEIG--INNPTEETIELIPEKHKDSLSDEFKTSSSIFSISKPPAKKRNIPSASSALII 173

Query: 175 GAILGFIQAIFLISGAKPLLNFMGVGSDSPMLRPAQQYLTLRSLGAPAVLLSLAMQGVFR 234
           G +LG  QA+FLIS AKPLL+FMGV  DSPM+RP+Q+YL+LRSLGAPAVLLSLA QGVFR
Sbjct: 174 GGVLGLFQAVFLISAAKPLLSFMGVKHDSPMMRPSQRYLSLRSLGAPAVLLSLAAQGVFR 233

Query: 235 GFKDTKTPLYAT 246
           GFKDT TPL+AT
Sbjct: 234 GFKDTTTPLFAT 245


>AT1G51340.1 | Symbols:  | MATE efflux family protein |
           chr1:19032034-19034681 FORWARD
          Length = 509

 Score =  251 bits (642), Expect = 3e-67,   Method: Compositional matrix adjust.
 Identities = 139/222 (62%), Positives = 163/222 (73%), Gaps = 6/222 (2%)

Query: 29  VLKMDELGLEXXXXXXXXXXXXXXXXXXXLVDTAFIGQIGPVELAAVGVSIALFNQVSRI 88
           VLK DELGLE                   LVDTAFIGQIGPVELAAVGVSIALFNQVSRI
Sbjct: 20  VLKFDELGLEIARIALPAALALTADPIASLVDTAFIGQIGPVELAAVGVSIALFNQVSRI 79

Query: 89  AIFPLVSVTTSFVAEEDTIGSVNPEVQD-SESLETGSVVNS---ESKELIPQNVSGEGAY 144
           AIFPLVS+TTSFVAEED   S    V+D  E +E G  +N+   E+ ELIP+      + 
Sbjct: 80  AIFPLVSITTSFVAEEDACSSQQDTVRDHKECIEIG--INNPTEETIELIPEKHKDSLSD 137

Query: 145 KSKSAMSSFDIAKMESGRRHIPSASSALVIGAILGFIQAIFLISGAKPLLNFMGVGSDSP 204
           + K++ S F I+K  + +R+IPSASSAL+IG +LG  QA+FLIS AKPLL+FMGV  DSP
Sbjct: 138 EFKTSSSIFSISKPPAKKRNIPSASSALIIGGVLGLFQAVFLISAAKPLLSFMGVKHDSP 197

Query: 205 MLRPAQQYLTLRSLGAPAVLLSLAMQGVFRGFKDTKTPLYAT 246
           M+RP+Q+YL+LRSLGAPAVLLSLA QGVFRGFKDT TPL+AT
Sbjct: 198 MMRPSQRYLSLRSLGAPAVLLSLAAQGVFRGFKDTTTPLFAT 239


>AT3G08040.2 | Symbols: FRD3, MAN1 | FRD3 (FERRIC REDUCTASE
           DEFECTIVE 3); antiporter/ transporter |
           chr3:2566593-2569397 REVERSE
          Length = 526

 Score =  206 bits (525), Expect = 1e-53,   Method: Compositional matrix adjust.
 Identities = 118/250 (47%), Positives = 152/250 (60%), Gaps = 29/250 (11%)

Query: 14  KKRIPLCIFFKDFRHVLKMDELGLEXXXXXXXXXXXXXXXXXXXLVDTAFIGQIGPVELA 73
           KK IP  + FKD RHV   D  G E                   L+DTAF+G++G V+LA
Sbjct: 12  KKPIPFLVIFKDLRHVFSRDTTGREILGIAFPAALALAADPIASLIDTAFVGRLGAVQLA 71

Query: 74  AVGVSIALFNQVSRIAIFPLVSVTTSFVAEEDTIGSVNPEVQDSESLETGSVVNSESKEL 133
           AVGVSIA+FNQ SRI IFPLVS+TTSFVAEEDT+  +  E   +  +   +++  +S E 
Sbjct: 72  AVGVSIAIFNQASRITIFPLVSLTTSFVAEEDTMEKMKEEANKANLVHAETILVQDSLE- 130

Query: 134 IPQNVSGEGAYKSKSAMSSFDI----------AKMESG-------RRHIPSASSALVIGA 176
                      K  S+ +S D            K  SG       +R I +AS+A+++G 
Sbjct: 131 -----------KGISSPTSNDTNQPQQPPAPDTKSNSGNKSNKKEKRTIRTASTAMILGL 179

Query: 177 ILGFIQAIFLISGAKPLLNFMGVGSDSPMLRPAQQYLTLRSLGAPAVLLSLAMQGVFRGF 236
           ILG +QAIFLI  +K LL  MGV  +SPML PA +YL++R+LGAPA+LLSLAMQG+FRGF
Sbjct: 180 ILGLVQAIFLIFSSKLLLGVMGVKPNSPMLSPAHKYLSIRALGAPALLLSLAMQGIFRGF 239

Query: 237 KDTKTPLYAT 246
           KDTKTPL+AT
Sbjct: 240 KDTKTPLFAT 249


>AT3G08040.1 | Symbols: FRD3, MAN1 | FRD3 (FERRIC REDUCTASE
           DEFECTIVE 3); antiporter/ transporter |
           chr3:2566593-2569397 REVERSE
          Length = 526

 Score =  206 bits (525), Expect = 1e-53,   Method: Compositional matrix adjust.
 Identities = 118/250 (47%), Positives = 152/250 (60%), Gaps = 29/250 (11%)

Query: 14  KKRIPLCIFFKDFRHVLKMDELGLEXXXXXXXXXXXXXXXXXXXLVDTAFIGQIGPVELA 73
           KK IP  + FKD RHV   D  G E                   L+DTAF+G++G V+LA
Sbjct: 12  KKPIPFLVIFKDLRHVFSRDTTGREILGIAFPAALALAADPIASLIDTAFVGRLGAVQLA 71

Query: 74  AVGVSIALFNQVSRIAIFPLVSVTTSFVAEEDTIGSVNPEVQDSESLETGSVVNSESKEL 133
           AVGVSIA+FNQ SRI IFPLVS+TTSFVAEEDT+  +  E   +  +   +++  +S E 
Sbjct: 72  AVGVSIAIFNQASRITIFPLVSLTTSFVAEEDTMEKMKEEANKANLVHAETILVQDSLE- 130

Query: 134 IPQNVSGEGAYKSKSAMSSFDI----------AKMESG-------RRHIPSASSALVIGA 176
                      K  S+ +S D            K  SG       +R I +AS+A+++G 
Sbjct: 131 -----------KGISSPTSNDTNQPQQPPAPDTKSNSGNKSNKKEKRTIRTASTAMILGL 179

Query: 177 ILGFIQAIFLISGAKPLLNFMGVGSDSPMLRPAQQYLTLRSLGAPAVLLSLAMQGVFRGF 236
           ILG +QAIFLI  +K LL  MGV  +SPML PA +YL++R+LGAPA+LLSLAMQG+FRGF
Sbjct: 180 ILGLVQAIFLIFSSKLLLGVMGVKPNSPMLSPAHKYLSIRALGAPALLLSLAMQGIFRGF 239

Query: 237 KDTKTPLYAT 246
           KDTKTPL+AT
Sbjct: 240 KDTKTPLFAT 249


>AT2G38330.1 | Symbols:  | MATE efflux family protein |
           chr2:16064571-16067318 FORWARD
          Length = 521

 Score =  132 bits (333), Expect = 2e-31,   Method: Compositional matrix adjust.
 Identities = 79/188 (42%), Positives = 111/188 (59%), Gaps = 42/188 (22%)

Query: 58  LVDTAFIGQIGPVELAAVGVSIALFNQVSRIAIFPLVSVTTSFVAEEDTIGSVNPEVQDS 117
           LVDTAF+G IG  ELAAVGVS+++FN VS++   PL++VTTSFVAEE  I + +    D+
Sbjct: 99  LVDTAFVGHIGSAELAAVGVSVSVFNLVSKLFNVPLLNVTTSFVAEEQAIAAKD----DN 154

Query: 118 ESLETGSVVNSESKELIPQNVSGEGAYKSKSAMSSFDIAKMESGRRHIPSASSALVIGAI 177
           +S+ET                                       ++ +PS S++LV+ A 
Sbjct: 155 DSIETS--------------------------------------KKVLPSVSTSLVLAAG 176

Query: 178 LGFIQAIFLISGAKPLLNFMGVGSDSPMLRPAQQYLTLRSLGAPAVLLSLAMQGVFRGFK 237
           +G  +AI L  G+  L++ M +  DSPM  PA+Q+L LR+ GAP ++++LA QG FRGFK
Sbjct: 177 VGIAEAIALSLGSDFLMDVMAIPFDSPMRIPAEQFLRLRAYGAPPIVVALAAQGAFRGFK 236

Query: 238 DTKTPLYA 245
           DT TPLYA
Sbjct: 237 DTTTPLYA 244


>AT4G38380.1 | Symbols:  | antiporter/ drug transporter |
           chr4:17971855-17974787 REVERSE
          Length = 560

 Score =  127 bits (320), Expect = 6e-30,   Method: Compositional matrix adjust.
 Identities = 77/191 (40%), Positives = 115/191 (60%), Gaps = 32/191 (16%)

Query: 58  LVDTAFIGQIGPVELAAVGVSIALFNQVSRIAIFPLVSVTTSFVAEEDTIGSVNPEVQDS 117
           L++TA+IG++G VEL + GVS+A+FN +S++   PL+SV TSFVAE+  I  +    QD 
Sbjct: 128 LMETAYIGRLGSVELGSAGVSMAIFNTISKLFNIPLLSVATSFVAED--IAKI--AAQDL 183

Query: 118 ESLETGSVVNSESKELIPQNVSGEGAYKSKSAMSSFDIAKMESGRRHIPSASSALVIGAI 177
            S ++ S + S+    +P+                         R+ + S S+ALV+   
Sbjct: 184 ASEDSQSDIPSQG---LPE-------------------------RKQLSSVSTALVLAIG 215

Query: 178 LGFIQAIFLISGAKPLLNFMGVGSDSPMLRPAQQYLTLRSLGAPAVLLSLAMQGVFRGFK 237
           +G  +A+ L   + P L  MG+ S S M  PA+Q+L LR+LGAPA ++SLA+QG+FRGFK
Sbjct: 216 IGIFEALALSLASGPFLRLMGIQSMSEMFIPARQFLVLRALGAPAYVVSLALQGIFRGFK 275

Query: 238 DTKTPLYATGM 248
           DTKTP+Y  G+
Sbjct: 276 DTKTPVYCLGI 286