Jatropha Genome Database

JcCB0171801.10
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCB0171801.10 - phase: 0 
         (142 letters)

Database: TAIR9_pep 
           33,410 sequences; 13,434,913 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT2G42110.1 | Symbols:  | unknown protein | chr2:17562234-175627...   106   4e-24

>AT2G42110.1 | Symbols:  | unknown protein | chr2:17562234-17562732
           REVERSE
          Length = 137

 Score =  106 bits (265), Expect = 4e-24,   Method: Compositional matrix adjust.
 Identities = 67/139 (48%), Positives = 83/139 (59%), Gaps = 12/139 (8%)

Query: 6   TNSTTTVQHVTKKSSDELLRKFAEVEDDNDEAXXXXXXXXXXXXXXXQARKEVACESPSH 65
           T   T + HV KKSSDELLRKFA+  DD DE+               +  K V  ES   
Sbjct: 9   TTIPTKITHVNKKSSDELLRKFAD-PDDVDESSKSTKRRKKSAKSSSRE-KGVDIES--- 63

Query: 66  YSNSLVEKRSLL--PPVTRKSVLLRQLGIGRSQLRARDFKNKSVFVAIEKTWRKTLEGAS 123
            ++ LVE++ LL  P   R+S+ +RQL  G+S LR     NKS+   I KTWRKT+EGAS
Sbjct: 64  NTSGLVERKRLLLAPASKRRSLFIRQLASGKSHLR-----NKSLVRTIGKTWRKTMEGAS 118

Query: 124 RVLLEKHYNRHRRLISDVA 142
           RV +EKHYNRHRRL +DV 
Sbjct: 119 RVFIEKHYNRHRRLTNDVV 137