Jatropha Genome Database

JcCB0171671.10

BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCB0171671.10 + phase: 1 /pseudo/partial
         (220 letters)

Database: TAIR9_pep 
           33,410 sequences; 13,434,913 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT1G03260.1 | Symbols:  | LOCATED IN: endomembrane system; EXPRE...   216   7e-57
AT5G19070.1 | Symbols:  | LOCATED IN: endomembrane system; EXPRE...   204   5e-53
AT1G22850.1 | Symbols:  | INVOLVED IN: biological_process unknow...    66   2e-11

>AT1G03260.1 | Symbols:  | LOCATED IN: endomembrane system;
           EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15
           growth stages; CONTAINS InterPro DOMAIN/s: SNARE
           associated Golgi protein (InterPro:IPR015414); BEST
           Arabidopsis thaliana protein match is: unknown protein
           (TAIR:AT5G19070.1); Has 3432 Blast hits to 3432 proteins
           in 730 species: Archae - 8; Bacteria - 1831; Metazoa -
           239; Fungi - 87; Plants - 162; Viruses - 0; Other
           Eukaryotes - 1105 (source: NCBI BLink). |
           chr1:795678-798102 REVERSE
          Length = 274

 Score =  216 bits (551), Expect = 7e-57,   Method: Compositional matrix adjust.
 Identities = 112/170 (65%), Positives = 132/170 (77%), Gaps = 1/170 (0%)

Query: 36  MAVLSLTRGSAFRFVXXXXXXAAGFTAFISLPIEKALKDLLLWIKHDLGPWGPLVLAAVY 95
           MA +S T  S FR         A  +A I LP+E+ LKD LLWIK DLGP+GPL LA  Y
Sbjct: 1   MAAMSFTP-STFRIAISLLLLVAIVSAVIFLPVEQKLKDFLLWIKEDLGPFGPLALALAY 59

Query: 96  IPLTILAVPASVLTLGGGYLFGLPVGFVADSIGATIGATAAFLVGRTIGRSYVMSKLKNY 155
           IPLTI+AVPASVLTLGGGYLFGLPVGFVADS+GAT+GATAAFL+GRTIG+SYV SK+K+Y
Sbjct: 60  IPLTIVAVPASVLTLGGGYLFGLPVGFVADSLGATLGATAAFLLGRTIGKSYVTSKIKHY 119

Query: 156 PKFEAVAIAVRKSGFKIXXXXXXXXXXXFNMLNYLLSVTPVRTKDFMLAS 205
           PKF+AV++A++KSGFKI           FNMLNYLLSVTPVR  ++MLA+
Sbjct: 120 PKFQAVSVAIQKSGFKIVLLLRVVPILPFNMLNYLLSVTPVRLGEYMLAT 169


>AT5G19070.1 | Symbols:  | LOCATED IN: endomembrane system;
           EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 15
           growth stages; CONTAINS InterPro DOMAIN/s: SNARE
           associated Golgi protein (InterPro:IPR015414); BEST
           Arabidopsis thaliana protein match is: unknown protein
           (TAIR:AT1G03260.1); Has 3029 Blast hits to 3029 proteins
           in 693 species: Archae - 10; Bacteria - 1724; Metazoa -
           229; Fungi - 74; Plants - 161; Viruses - 0; Other
           Eukaryotes - 831 (source: NCBI BLink). |
           chr5:6375569-6377470 FORWARD
          Length = 280

 Score =  204 bits (518), Expect = 5e-53,   Method: Compositional matrix adjust.
 Identities = 100/167 (59%), Positives = 126/167 (75%)

Query: 39  LSLTRGSAFRFVXXXXXXAAGFTAFISLPIEKALKDLLLWIKHDLGPWGPLVLAAVYIPL 98
           ++ T GSA R        AA   A   LP+EK LKD LLW++ DLGPWGP  LA  YIPL
Sbjct: 1   MAFTWGSALRISVLLILVAAIVLACYFLPVEKLLKDFLLWVEQDLGPWGPFALAVAYIPL 60

Query: 99  TILAVPASVLTLGGGYLFGLPVGFVADSIGATIGATAAFLVGRTIGRSYVMSKLKNYPKF 158
           T+LAVPASVLTLGGGYLFGLP+GFVADS+GAT+G+ AAFL+GRTIG+ +V++KLK+YP+F
Sbjct: 61  TVLAVPASVLTLGGGYLFGLPIGFVADSVGATLGSGAAFLLGRTIGKPFVVAKLKDYPQF 120

Query: 159 EAVAIAVRKSGFKIXXXXXXXXXXXFNMLNYLLSVTPVRTKDFMLAS 205
           ++VA+A+ KSGFKI           F+MLNYLLSVTP+R   ++L+S
Sbjct: 121 QSVALAIEKSGFKICLLLRLAPLLPFSMLNYLLSVTPIRLGPYLLSS 167


>AT1G22850.1 | Symbols:  | INVOLVED IN: biological_process unknown;
           LOCATED IN: chloroplast; EXPRESSED IN: 22 plant
           structures; EXPRESSED DURING: 15 growth stages; CONTAINS
           InterPro DOMAIN/s: SNARE associated Golgi protein
           (InterPro:IPR015414); BEST Arabidopsis thaliana protein
           match is: unknown protein (TAIR:AT1G03260.1); Has 3098
           Blast hits to 3098 proteins in 664 species: Archae - 6;
           Bacteria - 1614; Metazoa - 182; Fungi - 59; Plants -
           145; Viruses - 0; Other Eukaryotes - 1092 (source: NCBI
           BLink). | chr1:8080671-8082816 REVERSE
          Length = 344

 Score = 65.9 bits (159), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 41/122 (33%), Positives = 66/122 (54%)

Query: 84  GPWGPLVLAAVYIPLTILAVPASVLTLGGGYLFGLPVGFVADSIGATIGATAAFLVGRTI 143
           G  G  +  AVY  L ILA+PA  LT+  G LFG  +G +  SI  T+ A+ AFL+ R  
Sbjct: 149 GTAGYALFIAVYAGLEILAIPALPLTMSAGLLFGPLIGTIIVSISGTMAASVAFLIARYF 208

Query: 144 GRSYVMSKLKNYPKFEAVAIAVRKSGFKIXXXXXXXXXXXFNMLNYLLSVTPVRTKDFML 203
            R  ++  +++  KF A+  A+ ++GF++           F++ NYL  +T V+   ++L
Sbjct: 209 ARERILKLVEDNKKFLAIDKAIGENGFRVVTLLRLSPLLPFSLGNYLYGLTSVKFVPYVL 268

Query: 204 AS 205
            S
Sbjct: 269 GS 270