Jatropha Genome Database

JcCB0171531.10
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCB0171531.10 - phase: 0 /partial
         (131 letters)

Database: TAIR9_pep 
           33,410 sequences; 13,434,913 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT3G22200.1 | Symbols: POP2, GABA-T, HER1 | POP2 (POLLEN-PISTIL ...   114   2e-26

>AT3G22200.1 | Symbols: POP2, GABA-T, HER1 | POP2 (POLLEN-PISTIL
           INCOMPATIBILITY 2); 4-aminobutyrate transaminase/
           4-aminobutyrate:pyruvate transaminase |
           chr3:7835286-7838863 FORWARD
          Length = 504

 Score =  114 bits (284), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 63/119 (52%), Positives = 76/119 (63%), Gaps = 16/119 (13%)

Query: 1   MVINKILRSTLKNQLGSHSKHVAA-SGSSQKHLASAPCLAKLYGTEASLQKDDSTTDSRD 59
           +VIN + R     Q+  HSK+    SG+S           +++ TEA+ +K ++      
Sbjct: 2   VVINSLRRLARTTQVHLHSKYATCMSGNSTSR--------RIFTTEAAPEKKNTV----- 48

Query: 60  GRGYKGHDMLAPFTAGWQSTDLHPLVIDKSEGSYVYDINGKKYLDSLAGLWCTALGNDN 118
             G KGHDMLAPFTAGWQS DL PLVI KSEGSYVYD  GKKYLDSLAGLWCTALG + 
Sbjct: 49  --GSKGHDMLAPFTAGWQSADLDPLVIAKSEGSYVYDDTGKKYLDSLAGLWCTALGGNE 105