Jatropha Genome Database

JcCB0171281.10
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCB0171281.10 + phase: 0 /pseudo/partial
         (110 letters)

Database: TAIR9_pep 
           33,410 sequences; 13,434,913 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT5G42210.1 | Symbols:  | FUNCTIONS IN: molecular_function unkno...    96   5e-21
AT2G16970.1 | Symbols: MEE15 | MEE15 (maternal effect embryo arr...    94   2e-20
AT2G16980.2 | Symbols:  | tetracycline transporter | chr2:737637...    92   5e-20
AT2G16990.2 | Symbols:  | tetracycline transporter | chr2:738319...    75   1e-14
AT2G16990.1 | Symbols:  | tetracycline transporter | chr2:738319...    75   1e-14

>AT5G42210.1 | Symbols:  | FUNCTIONS IN: molecular_function unknown;
           INVOLVED IN: biological_process unknown; LOCATED IN:
           endomembrane system; CONTAINS InterPro DOMAIN/s: Major
           facilitator superfamily MFS-1 (InterPro:IPR011701),
           Major facilitator superfamily, general substrate
           transporter (InterPro:IPR016196); BEST Arabidopsis
           thaliana protein match is: tetracycline transporter
           (TAIR:AT2G16990.2); Has 985 Blast hits to 984 proteins
           in 348 species: Archae - 2; Bacteria - 541; Metazoa -
           251; Fungi - 0; Plants - 39; Viruses - 0; Other
           Eukaryotes - 152 (source: NCBI BLink). |
           chr5:16867865-16870568 FORWARD
          Length = 282

 Score = 95.5 bits (236), Expect = 5e-21,   Method: Compositional matrix adjust.
 Identities = 48/67 (71%), Positives = 53/67 (79%)

Query: 30  QGKAQGCISGIGSFANVVSPLLFSPLTALFLSERAPFHFPGFSIMCAGFTSMIALIQSIM 89
           QGKAQG IS I S ANV+SPL FSPLT  FLSERAPF+FPGFSIMCAGF   IA IQS+M
Sbjct: 210 QGKAQGIISSICSLANVISPLAFSPLTDWFLSERAPFNFPGFSIMCAGFAMTIAFIQSLM 269

Query: 90  MRLPPPL 96
           +R   P+
Sbjct: 270 IRAATPI 276


>AT2G16970.1 | Symbols: MEE15 | MEE15 (maternal effect embryo arrest
           15); tetracycline transporter | chr2:7369549-7375528
           FORWARD
          Length = 446

 Score = 93.6 bits (231), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 43/81 (53%), Positives = 60/81 (74%)

Query: 30  QGKAQGCISGIGSFANVVSPLLFSPLTALFLSERAPFHFPGFSIMCAGFTSMIALIQSIM 89
           QGK QGCISG+ SF+ VV+P ++SPLTALFLSE+APF+FPGFS++C  F+ MI    S++
Sbjct: 366 QGKVQGCISGVKSFSGVVAPFIYSPLTALFLSEKAPFYFPGFSLLCVTFSLMIGFFLSLL 425

Query: 90  MRLPPPLISNERVNNCNYVDA 110
           +R  P    N+ +NN +  +A
Sbjct: 426 IRDVPSPSMNKAINNISREEA 446


>AT2G16980.2 | Symbols:  | tetracycline transporter |
           chr2:7376376-7380944 FORWARD
          Length = 461

 Score = 92.4 bits (228), Expect = 5e-20,   Method: Compositional matrix adjust.
 Identities = 45/84 (53%), Positives = 62/84 (73%), Gaps = 1/84 (1%)

Query: 28  SFQGKAQGCISGIGSFANVVSPLLFSPLTALFLSERAPFHFPGFSIMCAGFTSMIALIQS 87
           S QGK QGCISG+ +FA VV+P ++SPLTALFLSE APF+FPGFSI+C   + MI  +QS
Sbjct: 378 SEQGKVQGCISGVRAFAQVVAPFVYSPLTALFLSENAPFYFPGFSILCIAISLMIGFLQS 437

Query: 88  IMMRLPPPL-ISNERVNNCNYVDA 110
           ++++  P L + N  +NN +  +A
Sbjct: 438 LLIKDHPSLPLVNITINNPSKAEA 461


>AT2G16990.2 | Symbols:  | tetracycline transporter |
           chr2:7383194-7387783 FORWARD
          Length = 456

 Score = 74.7 bits (182), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 40/77 (51%), Positives = 56/77 (72%)

Query: 30  QGKAQGCISGIGSFANVVSPLLFSPLTALFLSERAPFHFPGFSIMCAGFTSMIALIQSIM 89
           QGK QGCISG+ SF  VV+P +FSPLTALFLS+ APF+FPGFS++C   +S+I   QS++
Sbjct: 376 QGKVQGCISGVRSFGKVVAPFVFSPLTALFLSKNAPFYFPGFSLLCISLSSLIGFFQSLL 435

Query: 90  MRLPPPLISNERVNNCN 106
           ++  P    N+ +N  +
Sbjct: 436 IKDVPTPPLNKAINKTS 452


>AT2G16990.1 | Symbols:  | tetracycline transporter |
           chr2:7383194-7387783 FORWARD
          Length = 456

 Score = 74.7 bits (182), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 40/77 (51%), Positives = 56/77 (72%)

Query: 30  QGKAQGCISGIGSFANVVSPLLFSPLTALFLSERAPFHFPGFSIMCAGFTSMIALIQSIM 89
           QGK QGCISG+ SF  VV+P +FSPLTALFLS+ APF+FPGFS++C   +S+I   QS++
Sbjct: 376 QGKVQGCISGVRSFGKVVAPFVFSPLTALFLSKNAPFYFPGFSLLCISLSSLIGFFQSLL 435

Query: 90  MRLPPPLISNERVNNCN 106
           ++  P    N+ +N  +
Sbjct: 436 IKDVPTPPLNKAINKTS 452