Jatropha Genome Database

JcCB0170501.10
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCB0170501.10 + phase: 0 
         (116 letters)

Database: TAIR9_pep 
           33,410 sequences; 13,434,913 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT1G33500.1 | Symbols:  | FUNCTIONS IN: molecular_function unkno...   105   4e-24

>AT1G33500.1 | Symbols:  | FUNCTIONS IN: molecular_function unknown;
           INVOLVED IN: biological_process unknown; LOCATED IN:
           cellular_component unknown; EXPRESSED IN: sperm cell,
           embryo, flower; EXPRESSED DURING: petal differentiation
           and expansion stage, D bilateral stage; BEST Arabidopsis
           thaliana protein match is: kinase interacting family
           protein (TAIR:AT3G22790.1); Has 3639 Blast hits to 2952
           proteins in 364 species: Archae - 50; Bacteria - 374;
           Metazoa - 1667; Fungi - 244; Plants - 133; Viruses - 6;
           Other Eukaryotes - 1165 (source: NCBI BLink). |
           chr1:12152774-12154680 FORWARD
          Length = 276

 Score =  105 bits (263), Expect = 4e-24,   Method: Compositional matrix adjust.
 Identities = 55/96 (57%), Positives = 72/96 (75%), Gaps = 1/96 (1%)

Query: 6   SEVKKLKEDTDQMIQAKGQICSQILEKQRKIASLESDSYTLAQTLELIQQERVSLSAKLV 65
           SE K+LKE+TDQ  + +G+ICS ILEKQRKI+S+ESDS  +AQ+LELI QER SLSAKLV
Sbjct: 48  SETKRLKEETDQKTRTRGEICSHILEKQRKISSMESDSVNIAQSLELILQERDSLSAKLV 107

Query: 66  EKSAYYIKVANDINAKLQQQQDWINSNSINREMGEQ 101
            K + Y+K A +   KL++Q+ W  S+  N E G+Q
Sbjct: 108 SKRSNYLKTAEEARTKLEEQKGWFISHMSN-ETGQQ 142