Jatropha Genome Database

JcCB0164571.10
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCB0164571.10 - phase: 0 /partial
         (341 letters)

Database: TAIR9_pep 
           33,410 sequences; 13,434,913 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT1G80770.1 | Symbols: PDE318 | PDE318 (pigment defective 318); ...   447   e-126
AT1G50920.1 | Symbols:  | GTP-binding protein-related | chr1:188...   124   1e-28
AT1G10300.1 | Symbols:  | GTP-binding protein-related | chr1:337...   121   8e-28
AT5G18570.1 | Symbols:  | GTP1/OBG family protein | chr5:6171839...    61   9e-10
AT1G07615.1 | Symbols:  | GTP binding | chr1:2342277-2344200 REV...    58   1e-08

>AT1G80770.1 | Symbols: PDE318 | PDE318 (pigment defective 318); GTP
           binding | chr1:30355266-30357786 FORWARD
          Length = 451

 Score =  447 bits (1150), Expect = e-126,   Method: Compositional matrix adjust.
 Identities = 207/301 (68%), Positives = 258/301 (85%)

Query: 33  FQQLAVPLREYLDNFPKRKYLHPYERSLIELTLGEGNYEEVLRNVDALRKKVVSVGKEHA 92
            ++LA+PL+ Y+++FP++K LHPYERSLI+LTLG+G YEEVL  VD LRKKV SVGKEHA
Sbjct: 140 MKELALPLKGYMESFPRKKLLHPYERSLIDLTLGDGKYEEVLGKVDVLRKKVQSVGKEHA 199

Query: 93  SVCAKSSTKREAEERLNEGLEKLQEIFKREGKAVDELLNIAKTLRAMPVVDLETPTLCLV 152
           S+CAK+ +K+EAEERL+EG+EKL+ +F+++G AVD+LL IAK LRAMPVVDLE PTLCLV
Sbjct: 200 SLCAKALSKKEAEERLSEGVEKLELVFQQQGGAVDDLLTIAKVLRAMPVVDLEMPTLCLV 259

Query: 153 GAPNVGKSSLVRILSTGKPEVCNYPFTTRGILMGHISFDFKYFQVTDTPGLLKRCDEERN 212
           GAPNVGKSSLVRILSTGKPE+CNYPFTTRGILMGHI  +++ FQVTDTPGLL+RCDE+RN
Sbjct: 260 GAPNVGKSSLVRILSTGKPEICNYPFTTRGILMGHIVLNYQRFQVTDTPGLLRRCDEDRN 319

Query: 213 NLEKLTLAVLRHLPTAILYVHDLTGECGTPVSDQFEIYKEIKERFSNHLWLDVVSKCDLL 272
           NLEKLTLAVL HLPTA+LYVHDLTGECGT  SDQF+IYKE+KERF ++LW+D VSKCDLL
Sbjct: 320 NLEKLTLAVLTHLPTAVLYVHDLTGECGTSPSDQFQIYKEMKERFKDYLWIDAVSKCDLL 379

Query: 273 QELPVIFIAEDSNGGHFEMARYSKIGPSGAIHVSAKSREGLDELKAKVHDLLVAQMERIR 332
              PV++  ED +    E+ +Y + GP  +IHVS K+ +GL+ELK KV ++L ++ME+I+
Sbjct: 380 GGSPVMYAKEDRSSDDAEIIKYRERGPDESIHVSVKTEQGLNELKNKVKEVLSSEMEKIQ 439

Query: 333 G 333
            
Sbjct: 440 S 440


>AT1G50920.1 | Symbols:  | GTP-binding protein-related |
           chr1:18870555-18872570 FORWARD
          Length = 671

 Score =  124 bits (310), Expect = 1e-28,   Method: Compositional matrix adjust.
 Identities = 70/253 (27%), Positives = 129/253 (50%), Gaps = 3/253 (1%)

Query: 31  FTFQQLAVPLREYLDNFPKRKYLHPYERSLIELTLGEGNYEEVLRNVDALRKKVVSVGKE 90
           +T       L   +D FP+ + +HP+   L+ +   + +Y+  L  V+  R  +  + K+
Sbjct: 53  YTQTNFHAKLSAIIDEFPRLEQIHPFYGDLLHVLYNKDHYKLALGQVNTARNLISKISKD 112

Query: 91  HASVCAKSSTKREAEERLNEGLEKLQEIFKREGKAVDELLNIAKTLRAMPVVDLETPTLC 150
           +  +     +    +      L ++  + KR   ++  L  I + +  +P +D  T T+ 
Sbjct: 113 YVKLLKYGDSLYRCKCLKVAALGRMCTVLKRITPSLAYLEQIRQHMARLPSIDPNTRTVL 172

Query: 151 LVGAPNVGKSSLVRILSTGKPEVCNYPFTTRGILMGHISFDFKYFQVTDTPGLLKRCDEE 210
           + G PNVGKSS +  ++    +V  Y FTT+ + +GH  + +  +QV DTPG+L R  E+
Sbjct: 173 ICGYPNVGKSSFMNKVTRADVDVQPYAFTTKSLFVGHTDYKYLRYQVIDTPGILDRPFED 232

Query: 211 RNNLEKLTLAVLRHLPTAILYVHDLTGECGTPVSDQFEIYKEIKERFSNHLWLDVVSKCD 270
           RN +E  ++  L HL  A+L+  D++G CG  ++ Q  ++  IK  F N   + V +K D
Sbjct: 233 RNIIEMCSITALAHLRAAVLFFLDISGSCGYTIAQQAALFHSIKSLFMNKPLVIVCNKTD 292

Query: 271 LLQELPVIFIAED 283
           L   +P+  I+E+
Sbjct: 293 L---MPMENISEE 302


>AT1G10300.1 | Symbols:  | GTP-binding protein-related |
           chr1:3378142-3380226 FORWARD
          Length = 687

 Score =  121 bits (303), Expect = 8e-28,   Method: Compositional matrix adjust.
 Identities = 67/242 (27%), Positives = 120/242 (49%)

Query: 31  FTFQQLAVPLREYLDNFPKRKYLHPYERSLIELTLGEGNYEEVLRNVDALRKKVVSVGKE 90
           FT       L   +D FP+ K + P+   L+ +   + +Y+  L  V+  + K+  +  +
Sbjct: 82  FTESNFNEKLSAIIDEFPRLKEIQPFYEDLLHVLYNKDHYKLALGQVNTAKNKISKIAMD 141

Query: 91  HASVCAKSSTKREAEERLNEGLEKLQEIFKREGKAVDELLNIAKTLRAMPVVDLETPTLC 150
           +  +     +    +      L ++  + K  G ++  L  + + +  +P +D  T TL 
Sbjct: 142 YVKLLKHGDSLYRCKCLKVAALGRMCTVMKGIGPSLAYLEQVRQHIARLPSIDPNTRTLL 201

Query: 151 LVGAPNVGKSSLVRILSTGKPEVCNYPFTTRGILMGHISFDFKYFQVTDTPGLLKRCDEE 210
           + G PNVGKSS +  ++     V  Y FTT+ + +GH  +    +QV DTPGLL R  E+
Sbjct: 202 ICGCPNVGKSSFMNKVTRADVAVQPYAFTTKSLFLGHTDYKCLRYQVIDTPGLLDREIED 261

Query: 211 RNNLEKLTLAVLRHLPTAILYVHDLTGECGTPVSDQFEIYKEIKERFSNHLWLDVVSKCD 270
           RN +E  ++  L H+  A+L+  D++G CG  ++ Q  ++  IK  F N   + V +K D
Sbjct: 262 RNIIELCSITALAHIRAAVLFFLDISGSCGYTIAQQASLFHNIKSVFKNKPLVIVCNKTD 321

Query: 271 LL 272
           L+
Sbjct: 322 LM 323


>AT5G18570.1 | Symbols:  | GTP1/OBG family protein |
           chr5:6171839-6174823 REVERSE
          Length = 681

 Score = 61.2 bits (147), Expect = 9e-10,   Method: Compositional matrix adjust.
 Identities = 58/184 (31%), Positives = 85/184 (46%), Gaps = 26/184 (14%)

Query: 149 LCLVGAPNVGKSSLVRILSTGKPEVCNYPFTTRGILMGHISFDF-KYFQVTDTPGLLKRC 207
           + +VGAPN GKS+L+ ++S  +P + NYPFTT    +G +SFD+     V D PGLL   
Sbjct: 381 VGIVGAPNAGKSTLLSVISAAQPTIANYPFTTLLPNLGVVSFDYDSTMVVADLPGLL--- 437

Query: 208 DEERNNLEKLTLAVLRHLPTAILYVHDLTGECGTPVSDQFEIYKEIKERFSNHL----WL 263
            E  +    L    LRH       VH + G    P   +FE  +   E FS  +    ++
Sbjct: 438 -EGAHRGFGLGHEFLRHTERCSALVHVVDGSAPQP-ELEFEAVRLELELFSPEIAEKPYV 495

Query: 264 DVVSKCDL---LQELPVIFIAEDSNGGHFEMARYSKIGPSGAIHVSAKSREGLDELKAKV 320
              +K DL    ++ P+            E  R   I P     +SA  REG  E+ + V
Sbjct: 496 VAYNKMDLPDAYEKWPMF----------QETLRARGIEP---FCMSAVQREGTHEVISSV 542

Query: 321 HDLL 324
           ++LL
Sbjct: 543 YELL 546


>AT1G07615.1 | Symbols:  | GTP binding | chr1:2342277-2344200
           REVERSE
          Length = 493

 Score = 57.8 bits (138), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 37/90 (41%), Positives = 50/90 (55%), Gaps = 6/90 (6%)

Query: 149 LCLVGAPNVGKSSLVRILSTGKPEVCNYPFTTRGILMGHISFDFKYFQVTDTPGLLKRCD 208
           + LVG PN GKS+L+  LS  KP V +Y FTT    +G++++D     V D PGL+K   
Sbjct: 306 VGLVGMPNAGKSTLLGALSRAKPRVGHYAFTTLRPNLGNVNYDDFSMTVADIPGLIKGAH 365

Query: 209 EERNNLEKLTLAVLRHLP-TAIL-YVHDLT 236
           + R     L    LRH+  T +L YV DL 
Sbjct: 366 QNRG----LGHNFLRHIERTKVLAYVVDLA 391