Jatropha Genome Database

JcCB0163231.10
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCB0163231.10 - phase: 0 /partial
         (304 letters)

Database: TAIR9_pep 
           33,410 sequences; 13,434,913 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT2G38780.1 | Symbols:  | unknown protein | chr2:16210864-162141...   250   7e-67

>AT2G38780.1 | Symbols:  | unknown protein | chr2:16210864-16214110
           FORWARD
          Length = 465

 Score =  250 bits (639), Expect = 7e-67,   Method: Compositional matrix adjust.
 Identities = 148/310 (47%), Positives = 188/310 (60%), Gaps = 32/310 (10%)

Query: 2   ASLHQ----IQHSWLSS-VTQKPALFPSKTSPFKISFSLNPSNTEPTPQNPPEFEPEPGP 56
           +SLHQ      HSWLSS +T+ PA F S +   K S  L+   T     +P         
Sbjct: 25  SSLHQTMASFNHSWLSSPLTETPAFFFSPSQHPK-SLKLSLFRTRSNSSSPDRSSEVELD 83

Query: 57  AHPVKLAFEKAKAYKKSTGDSKKTKLGQNLXXXXXXXXXXXXXXDEEVPASVKVAMENAK 116
             PVKLA +KA+AYKKS  + KK +                   DEE+P SVK AM+ A 
Sbjct: 84  VDPVKLALKKAEAYKKSKSEQKKPE---------------KNAGDEELPLSVKAAMQKAN 128

Query: 117 EYKKNKGVAGGGDVKGSARSETNSGLKGGNRENLVSGLVESSASNKEKLSISSMDFMGLN 176
           +YKK KG+      K    +   S ++  N+      +VE +   K++L +SS+DFMGL 
Sbjct: 129 DYKKRKGLGTDAVAKAKPSNTDQSFVRLANK------VVEDNDVKKKELKVSSIDFMGLG 182

Query: 177 FADKKRGKGLPPGLTPVTDSFPGGDLPEVEIIVGDTSKFGDPTTSMPKPSQEND--SEFY 234
           FADKK  +GLP GL PV D  P GDLPEVE IVGD ++F +    +    QE D  S+ Y
Sbjct: 183 FADKKSTRGLPAGLVPVVDYLPEGDLPEVEFIVGDKTRFAEKVKEV---EQEGDGNSDVY 239

Query: 235 KPKVSTWGVFPRPGNISKTFGGGRTIRPGDVLETAEERTAKDERTKQLLAAYRKKVGLNV 294
           KPKVSTWGVFPRP NISKTFGGGRT+RPGD +ETAEER  ++E+TK+LL AY++ +GLN+
Sbjct: 240 KPKVSTWGVFPRPSNISKTFGGGRTLRPGDSVETAEERIVREEKTKKLLIAYKESLGLNI 299

Query: 295 DPKLKLECEK 304
           DPKLKLECEK
Sbjct: 300 DPKLKLECEK 309