Jatropha Genome Database

JcCB0162471.10
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCB0162471.10 + phase: 1 /pseudo/partial
         (125 letters)

Database: TAIR9_pep 
           33,410 sequences; 13,434,913 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT4G35880.1 | Symbols:  | aspartyl protease family protein | chr...    46   5e-06

>AT4G35880.1 | Symbols:  | aspartyl protease family protein |
           chr4:16993339-16995721 FORWARD
          Length = 524

 Score = 46.2 bits (108), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 23/52 (44%), Positives = 32/52 (61%), Gaps = 2/52 (3%)

Query: 14  GMLTYIVXVLSKVEMXI--SSDMTGYLIVFNRERNVLGWKPSNCYDALNTNT 63
           G L Y + ++   E+ I   + MTGY +VF+RE+ VL WK  +CYD   TNT
Sbjct: 408 GELVYCLAIVKSSELNIIGQNYMTGYRVVFDREKLVLAWKKFDCYDIEETNT 459