Jatropha Genome Database

JcCB0159721.10
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCB0159721.10 + phase: 0 
         (242 letters)

Database: TAIR9_pep 
           33,410 sequences; 13,434,913 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT1G06820.1 | Symbols: CRTISO, CCR2 | CRTISO (CAROTENOID ISOMERA...   252   2e-67
AT1G57770.1 | Symbols:  | amine oxidase family | chr1:21395254-2...    59   3e-09

>AT1G06820.1 | Symbols: CRTISO, CCR2 | CRTISO (CAROTENOID
           ISOMERASE); carotenoid isomerase | chr1:2093145-2096220
           REVERSE
          Length = 595

 Score =  252 bits (643), Expect = 2e-67,   Method: Compositional matrix adjust.
 Identities = 120/134 (89%), Positives = 126/134 (94%)

Query: 77  ERHYDAIVIGSGIGGLVAATQLAVKGARVLVLEKYTIPGGSSGYYQRDGYTFDVGSSVMF 136
           E  YDAIVIGSGIGGLVAATQLAVK ARVLVLEKY IPGGSSG+Y+RDGYTFDVGSSVMF
Sbjct: 75  ESLYDAIVIGSGIGGLVAATQLAVKEARVLVLEKYLIPGGSSGFYERDGYTFDVGSSVMF 134

Query: 137 GFSDKGNLNLITQALAAVGCKMEVIPDPTTVHFHLPNNLSVRVHREYSDFISELTTKFPH 196
           GFSDKGNLNLITQAL AVG KMEVIPDPTTVHFHLPNNLSVR+HREY DFI+ELT+KFPH
Sbjct: 135 GFSDKGNLNLITQALKAVGRKMEVIPDPTTVHFHLPNNLSVRIHREYDDFIAELTSKFPH 194

Query: 197 EKEGILKFYGECWK 210
           EKEGIL FYG+CWK
Sbjct: 195 EKEGILGFYGDCWK 208


>AT1G57770.1 | Symbols:  | amine oxidase family |
           chr1:21395254-21398135 FORWARD
          Length = 574

 Score = 58.9 bits (141), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 33/80 (41%), Positives = 44/80 (55%), Gaps = 1/80 (1%)

Query: 77  ERHYDAIVIGSGIGGLVAATQLAVKGARVLVLEKYTIPGGSSGYYQRDGYTFDVGSSVMF 136
           E   D +VIGSGIGGL     LA     V+VLE +  PGG++  ++  GY FD G S+  
Sbjct: 50  EPEADVVVIGSGIGGLCCGALLARYDQDVIVLESHDHPGGAAHSFEIKGYKFDSGPSLFS 109

Query: 137 GFSDKG-NLNLITQALAAVG 155
           G   +G   N + Q L A+G
Sbjct: 110 GLQSRGPQANPLAQVLDALG 129