Jatropha Genome Database

JcCB0159671.10
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCB0159671.10 + phase: 0 /pseudo/partial
         (226 letters)

Database: TAIR9_pep 
           33,410 sequences; 13,434,913 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT3G04870.2 | Symbols: ZDS, PDE181 | ZDS (ZETA-CAROTENE DESATURA...   300   4e-82
AT3G04870.1 | Symbols: ZDS, PDE181 | ZDS (ZETA-CAROTENE DESATURA...   300   4e-82
AT4G14210.2 | Symbols: PDS3, PDS, PDE226 | PDS3 (PHYTOENE DESATU...    89   3e-18
AT4G14210.1 | Symbols: PDS3, PDS, PDE226 | PDS3 (PHYTOENE DESATU...    89   3e-18

>AT3G04870.2 | Symbols: ZDS, PDE181 | ZDS (ZETA-CAROTENE
           DESATURASE); carotene 7,8-desaturase |
           chr3:1342842-1346189 FORWARD
          Length = 558

 Score =  300 bits (768), Expect = 4e-82,   Method: Compositional matrix adjust.
 Identities = 141/188 (75%), Positives = 157/188 (83%)

Query: 1   ATNXXXXXXXXXXXXXXXPGIKRLLPSQWRESQFFNNIYELVGVPVVTVQLRYNGWVTEL 60
           ATN               PGIKRLLP +WRES+FFN+IYEL GVPVVTVQLRYNGWVTEL
Sbjct: 322 ATNKKIVKADVYVAACDVPGIKRLLPKEWRESRFFNDIYELEGVPVVTVQLRYNGWVTEL 381

Query: 61  QDLERSRQLRQALGLDNLLYTPDADFSCFADLALTSPEDYYIEGQGSLLQCVLTPGDPYM 120
           QD+E +RQL++A+GLDNLLYTPDADFSCFADLAL SP DYYIEGQG+LLQCVLTPGDPYM
Sbjct: 382 QDIELARQLKRAVGLDNLLYTPDADFSCFADLALASPADYYIEGQGTLLQCVLTPGDPYM 441

Query: 121 PLSNDEIINRVSKQVLALFPSSQGLEVIWSSVVKIGQSLYREGPGKDPFRPDQKTPVKNF 180
            + ND+II +V+ QV  LFPSS+GLEV WSSVVKI QSLYRE PGKDPFRPDQKTP+KNF
Sbjct: 442 RMPNDKIIEKVAMQVTELFPSSRGLEVTWSSVVKIAQSLYREAPGKDPFRPDQKTPIKNF 501

Query: 181 FLSGSVHK 188
           FL+GS  K
Sbjct: 502 FLAGSYTK 509


>AT3G04870.1 | Symbols: ZDS, PDE181 | ZDS (ZETA-CAROTENE
           DESATURASE); carotene 7,8-desaturase |
           chr3:1342842-1346189 FORWARD
          Length = 558

 Score =  300 bits (768), Expect = 4e-82,   Method: Compositional matrix adjust.
 Identities = 141/188 (75%), Positives = 157/188 (83%)

Query: 1   ATNXXXXXXXXXXXXXXXPGIKRLLPSQWRESQFFNNIYELVGVPVVTVQLRYNGWVTEL 60
           ATN               PGIKRLLP +WRES+FFN+IYEL GVPVVTVQLRYNGWVTEL
Sbjct: 322 ATNKKIVKADVYVAACDVPGIKRLLPKEWRESRFFNDIYELEGVPVVTVQLRYNGWVTEL 381

Query: 61  QDLERSRQLRQALGLDNLLYTPDADFSCFADLALTSPEDYYIEGQGSLLQCVLTPGDPYM 120
           QD+E +RQL++A+GLDNLLYTPDADFSCFADLAL SP DYYIEGQG+LLQCVLTPGDPYM
Sbjct: 382 QDIELARQLKRAVGLDNLLYTPDADFSCFADLALASPADYYIEGQGTLLQCVLTPGDPYM 441

Query: 121 PLSNDEIINRVSKQVLALFPSSQGLEVIWSSVVKIGQSLYREGPGKDPFRPDQKTPVKNF 180
            + ND+II +V+ QV  LFPSS+GLEV WSSVVKI QSLYRE PGKDPFRPDQKTP+KNF
Sbjct: 442 RMPNDKIIEKVAMQVTELFPSSRGLEVTWSSVVKIAQSLYREAPGKDPFRPDQKTPIKNF 501

Query: 181 FLSGSVHK 188
           FL+GS  K
Sbjct: 502 FLAGSYTK 509


>AT4G14210.2 | Symbols: PDS3, PDS, PDE226 | PDS3 (PHYTOENE
           DESATURASE 3); phytoene dehydrogenase |
           chr4:8190426-8194769 REVERSE
          Length = 566

 Score = 88.6 bits (218), Expect = 3e-18,   Method: Compositional matrix adjust.
 Identities = 54/189 (28%), Positives = 99/189 (52%), Gaps = 21/189 (11%)

Query: 21  IKRLLPSQWRESQFFNNIYELVGVPVVTVQLRYNGWVTELQDLERSRQLRQALGLDNLLY 80
           +K LLP  W+E  +F  + +LVGVPV+ V + ++            R+L+     D+LL+
Sbjct: 366 LKLLLPDPWKEIPYFKKLDKLVGVPVINVHIWFD------------RKLKNTY--DHLLF 411

Query: 81  TPDADFSCFADLALTSPEDYYIEGQGSLLQCVLTPGDPYMPLSNDEIINRVSKQVLALFP 140
           +     S +AD++LT  E  Y +   S+L+ V  P + ++  ++ +II+   K++  LFP
Sbjct: 412 SRSNLLSVYADMSLTCKE--YYDPNRSMLELVFAPAEEWISRTDSDIIDATMKELEKLFP 469

Query: 141 SS-----QGLEVIWSSVVKIGQSLYREGPGKDPFRPDQKTPVKNFFLSGSVHKFLHLPDI 195
                     +++   VVK  +S+Y+  P  +P RP Q++P++ F+L+G   K  +L  +
Sbjct: 470 DEISADQSKAKILKYHVVKTPRSVYKTIPNCEPCRPLQRSPIEGFYLAGDYTKQKYLASM 529

Query: 196 PRPAVRGMF 204
               + G F
Sbjct: 530 EGAVLSGKF 538


>AT4G14210.1 | Symbols: PDS3, PDS, PDE226 | PDS3 (PHYTOENE
           DESATURASE 3); phytoene dehydrogenase |
           chr4:8190426-8194769 REVERSE
          Length = 566

 Score = 88.6 bits (218), Expect = 3e-18,   Method: Compositional matrix adjust.
 Identities = 54/189 (28%), Positives = 99/189 (52%), Gaps = 21/189 (11%)

Query: 21  IKRLLPSQWRESQFFNNIYELVGVPVVTVQLRYNGWVTELQDLERSRQLRQALGLDNLLY 80
           +K LLP  W+E  +F  + +LVGVPV+ V + ++            R+L+     D+LL+
Sbjct: 366 LKLLLPDPWKEIPYFKKLDKLVGVPVINVHIWFD------------RKLKNTY--DHLLF 411

Query: 81  TPDADFSCFADLALTSPEDYYIEGQGSLLQCVLTPGDPYMPLSNDEIINRVSKQVLALFP 140
           +     S +AD++LT  E  Y +   S+L+ V  P + ++  ++ +II+   K++  LFP
Sbjct: 412 SRSNLLSVYADMSLTCKE--YYDPNRSMLELVFAPAEEWISRTDSDIIDATMKELEKLFP 469

Query: 141 SS-----QGLEVIWSSVVKIGQSLYREGPGKDPFRPDQKTPVKNFFLSGSVHKFLHLPDI 195
                     +++   VVK  +S+Y+  P  +P RP Q++P++ F+L+G   K  +L  +
Sbjct: 470 DEISADQSKAKILKYHVVKTPRSVYKTIPNCEPCRPLQRSPIEGFYLAGDYTKQKYLASM 529

Query: 196 PRPAVRGMF 204
               + G F
Sbjct: 530 EGAVLSGKF 538