Jatropha Genome Database

JcCB0158231.10
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCB0158231.10 + phase: 1 /pseudo/partial
         (213 letters)

Database: TAIR9_pep 
           33,410 sequences; 13,434,913 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT2G18950.1 | Symbols: HPT1, TPT1, ATHPT, VTE2 | HPT1 (HOMOGENTI...   176   1e-44
AT3G11945.1 | Symbols: ATHST | homogentisate farnesyltransferase...    66   2e-11
AT3G11945.2 | Symbols: ATHST | homogentisate farnesyltransferase...    65   2e-11

>AT2G18950.1 | Symbols: HPT1, TPT1, ATHPT, VTE2 | HPT1
           (HOMOGENTISATE PHYTYLTRANSFERASE 1); homogentisate
           phytyltransferase/ prenyltransferase |
           chr2:8207491-8210047 FORWARD
          Length = 393

 Score =  176 bits (445), Expect = 1e-44,   Method: Compositional matrix adjust.
 Identities = 97/185 (52%), Positives = 120/185 (64%), Gaps = 16/185 (8%)

Query: 5   RCRTCNILQRYYVPKFQRHRVKHYLRHSLEKSTVYQKNDSSFLVHAASGQPFEPQPEAYN 64
           RC +  ++ +   PKF+ + V+   + S     +Y K+ S F V+A +GQP     EA++
Sbjct: 36  RCDSSKVVAK---PKFRNNLVRPDGQGS--SLLLYPKHKSRFRVNATAGQP-----EAFD 85

Query: 65  PKSASKSVLNAIDAFYRFSRPHTVIGTXXXXXXXXXXXXEKLSDLSPLFFTGVLEAVAAA 124
             S  KS  +++DAFYRFSRPHTVIGT            EK+SD+SPL FTG+LEAV AA
Sbjct: 86  SNSKQKSFRDSLDAFYRFSRPHTVIGTVLSILSVSFLAVEKVSDISPLLFTGILEAVVAA 145

Query: 125 LMMNIYIVGLNQLSDIEIDKVNKPYLPLASGEYSTGTGVLIVTSFWIM------VSASIT 178
           LMMNIYIVGLNQLSD+EIDKVNKPYLPLASGEYS  TG+ IV SF IM      +  S  
Sbjct: 146 LMMNIYIVGLNQLSDVEIDKVNKPYLPLASGEYSVNTGIAIVASFSIMSFWLGWIVGSWP 205

Query: 179 FFWQL 183
            FW L
Sbjct: 206 LFWAL 210


>AT3G11945.1 | Symbols: ATHST | homogentisate farnesyltransferase/
           homogentisate geranylgeranyltransferase/ homogentisate
           solanesyltransferase | chr3:3780041-3782880 REVERSE
          Length = 386

 Score = 65.9 bits (159), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 40/98 (40%), Positives = 59/98 (60%), Gaps = 5/98 (5%)

Query: 77  DAFYRFSRPHTVIGTXXXXXXXXXXXXEKLSDLSPLFFTGVLEAVAAALMM---NIYIVG 133
           +A +RF RPHT+ GT             + + L  + ++ VL+A++  L +   N YIVG
Sbjct: 92  NACWRFLRPHTIRGTALGSTALVTRALIENTHL--IKWSLVLKALSGLLALICGNGYIVG 149

Query: 134 LNQLSDIEIDKVNKPYLPLASGEYSTGTGVLIVTSFWI 171
           +NQ+ DI IDKVNKPYLP+A+G+ S  +  L+V  F I
Sbjct: 150 INQIYDIGIDKVNKPYLPIAAGDLSVQSAWLLVIFFAI 187


>AT3G11945.2 | Symbols: ATHST | homogentisate farnesyltransferase/
           homogentisate geranylgeranyltransferase/ homogentisate
           solanesyltransferase | chr3:3780041-3782880 REVERSE
          Length = 393

 Score = 65.5 bits (158), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 40/98 (40%), Positives = 59/98 (60%), Gaps = 5/98 (5%)

Query: 77  DAFYRFSRPHTVIGTXXXXXXXXXXXXEKLSDLSPLFFTGVLEAVAAALMM---NIYIVG 133
           +A +RF RPHT+ GT             + + L  + ++ VL+A++  L +   N YIVG
Sbjct: 99  NACWRFLRPHTIRGTALGSTALVTRALIENTHL--IKWSLVLKALSGLLALICGNGYIVG 156

Query: 134 LNQLSDIEIDKVNKPYLPLASGEYSTGTGVLIVTSFWI 171
           +NQ+ DI IDKVNKPYLP+A+G+ S  +  L+V  F I
Sbjct: 157 INQIYDIGIDKVNKPYLPIAAGDLSVQSAWLLVIFFAI 194