Jatropha Genome Database

JcCB0156721.20
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCB0156721.20 - phase: 0 
         (134 letters)

Database: TAIR9_pep 
           33,410 sequences; 13,434,913 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT1G75350.1 | Symbols: emb2184 | emb2184 (embryo defective 2184)...   182   4e-47

>AT1G75350.1 | Symbols: emb2184 | emb2184 (embryo defective 2184);
           structural constituent of ribosome |
           chr1:28272163-28272687 FORWARD
          Length = 144

 Score =  182 bits (463), Expect = 4e-47,   Method: Compositional matrix adjust.
 Identities = 86/133 (64%), Positives = 104/133 (78%), Gaps = 9/133 (6%)

Query: 1   MALSLTSSFLQIKXXXXXXXXXRKV---------KVNAGMNSNLQVTCRKKDIHPQFYED 51
           MA+SL +SFLQI          + V          V    N+ +Q+TCRKK++HP+F+ED
Sbjct: 1   MAVSLPNSFLQISPCVPSLQLRKPVMAAVKGGKQSVRRSSNTVVQITCRKKELHPEFHED 60

Query: 52  AKVYCNGELVMTTGGTQKEYVVDVWSGNHPFYLGNRSAVVVDADQVEKFRKKFGELSQLM 111
           AKVYCNGELVMTTGGT+KEYVVDVWSGNHPFYLGNRSA++VDADQVEKFRK+F  LS++M
Sbjct: 61  AKVYCNGELVMTTGGTKKEYVVDVWSGNHPFYLGNRSALMVDADQVEKFRKRFAGLSEIM 120

Query: 112 EIPVLKGEIVLPT 124
           EIPVLKGEI++PT
Sbjct: 121 EIPVLKGEIIMPT 133