Jatropha Genome Database

JcCB0156231.10
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCB0156231.10 + phase: 0 /partial
         (104 letters)

Database: TAIR9_pep 
           33,410 sequences; 13,434,913 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT1G58350.2 | Symbols: ZW18 | ZW18 | chr1:21663131-21666827 REVERSE   157   9e-40
AT1G58350.1 | Symbols: ZW18 | ZW18 | chr1:21663131-21666827 REVERSE   157   9e-40
AT1G09980.2 | Symbols:  | INVOLVED IN: biological_process unknow...   156   2e-39
AT1G09980.1 | Symbols:  | INVOLVED IN: biological_process unknow...   156   2e-39

>AT1G58350.2 | Symbols: ZW18 | ZW18 | chr1:21663131-21666827 REVERSE
          Length = 794

 Score =  157 bits (398), Expect = 9e-40,   Method: Compositional matrix adjust.
 Identities = 72/104 (69%), Positives = 85/104 (81%)

Query: 1   MWDTVQQIAIYIHRFHNLDLFQQGFYQIKVTMRWEDSEYASIGTPARVVQYEAHDMDSDS 60
           M DTVQ+IAIYIHRFHNLDLFQQG+YQIK+TMRWED +  + G P+RVVQYEA D  ++ 
Sbjct: 35  MVDTVQEIAIYIHRFHNLDLFQQGWYQIKITMRWEDGDNVTRGIPSRVVQYEAPDSGAND 94

Query: 61  IYGAWRINDTDNSFLTQPFRIKYARQDVYLSVMISFDLSLSKYK 104
            YG W+I D DNSFLTQPFRIKYARQD+ L +MISF L L +Y+
Sbjct: 95  SYGVWKIVDKDNSFLTQPFRIKYARQDIRLCMMISFTLPLERYE 138


>AT1G58350.1 | Symbols: ZW18 | ZW18 | chr1:21663131-21666827 REVERSE
          Length = 794

 Score =  157 bits (398), Expect = 9e-40,   Method: Compositional matrix adjust.
 Identities = 72/104 (69%), Positives = 85/104 (81%)

Query: 1   MWDTVQQIAIYIHRFHNLDLFQQGFYQIKVTMRWEDSEYASIGTPARVVQYEAHDMDSDS 60
           M DTVQ+IAIYIHRFHNLDLFQQG+YQIK+TMRWED +  + G P+RVVQYEA D  ++ 
Sbjct: 35  MVDTVQEIAIYIHRFHNLDLFQQGWYQIKITMRWEDGDNVTRGIPSRVVQYEAPDSGAND 94

Query: 61  IYGAWRINDTDNSFLTQPFRIKYARQDVYLSVMISFDLSLSKYK 104
            YG W+I D DNSFLTQPFRIKYARQD+ L +MISF L L +Y+
Sbjct: 95  SYGVWKIVDKDNSFLTQPFRIKYARQDIRLCMMISFTLPLERYE 138


>AT1G09980.2 | Symbols:  | INVOLVED IN: biological_process unknown;
           LOCATED IN: mitochondrion; EXPRESSED IN: 22 plant
           structures; EXPRESSED DURING: 13 growth stages; CONTAINS
           InterPro DOMAIN/s: Protein of unknown function DUF676,
           hydrolase-like (InterPro:IPR007751); BEST Arabidopsis
           thaliana protein match is: ZW18 (TAIR:AT1G58350.2); Has
           342 Blast hits to 275 proteins in 70 species: Archae -
           0; Bacteria - 0; Metazoa - 214; Fungi - 0; Plants - 45;
           Viruses - 0; Other Eukaryotes - 83 (source: NCBI BLink).
           | chr1:3256541-3260866 REVERSE
          Length = 801

 Score =  156 bits (395), Expect = 2e-39,   Method: Compositional matrix adjust.
 Identities = 71/104 (68%), Positives = 86/104 (82%)

Query: 1   MWDTVQQIAIYIHRFHNLDLFQQGFYQIKVTMRWEDSEYASIGTPARVVQYEAHDMDSDS 60
           M DTVQ+IAIYIHRFHNLDLFQQG+YQIK++MRWED +  S G P+RVVQYEA D  S+ 
Sbjct: 35  MIDTVQEIAIYIHRFHNLDLFQQGWYQIKISMRWEDGDNNSCGIPSRVVQYEALDSTSND 94

Query: 61  IYGAWRINDTDNSFLTQPFRIKYARQDVYLSVMISFDLSLSKYK 104
            YG W+I+D D+SFLTQPFRIKYARQDV L +M+SF + L +Y+
Sbjct: 95  SYGVWKIDDKDSSFLTQPFRIKYARQDVRLCMMVSFTMPLERYE 138


>AT1G09980.1 | Symbols:  | INVOLVED IN: biological_process unknown;
           LOCATED IN: mitochondrion; EXPRESSED IN: 22 plant
           structures; EXPRESSED DURING: 13 growth stages; CONTAINS
           InterPro DOMAIN/s: Protein of unknown function DUF676,
           hydrolase-like (InterPro:IPR007751); BEST Arabidopsis
           thaliana protein match is: ZW18 (TAIR:AT1G58350.2); Has
           342 Blast hits to 275 proteins in 70 species: Archae -
           0; Bacteria - 0; Metazoa - 214; Fungi - 0; Plants - 45;
           Viruses - 0; Other Eukaryotes - 83 (source: NCBI BLink).
           | chr1:3256541-3260866 REVERSE
          Length = 802

 Score =  156 bits (395), Expect = 2e-39,   Method: Compositional matrix adjust.
 Identities = 71/104 (68%), Positives = 86/104 (82%)

Query: 1   MWDTVQQIAIYIHRFHNLDLFQQGFYQIKVTMRWEDSEYASIGTPARVVQYEAHDMDSDS 60
           M DTVQ+IAIYIHRFHNLDLFQQG+YQIK++MRWED +  S G P+RVVQYEA D  S+ 
Sbjct: 35  MIDTVQEIAIYIHRFHNLDLFQQGWYQIKISMRWEDGDNNSCGIPSRVVQYEALDSTSND 94

Query: 61  IYGAWRINDTDNSFLTQPFRIKYARQDVYLSVMISFDLSLSKYK 104
            YG W+I+D D+SFLTQPFRIKYARQDV L +M+SF + L +Y+
Sbjct: 95  SYGVWKIDDKDSSFLTQPFRIKYARQDVRLCMMVSFTMPLERYE 138