Jatropha Genome Database

JcCB0155891.20
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCB0155891.20 - phase: 2 /TE/partial
         (371 letters)

Database: TAIR9_pep 
           33,410 sequences; 13,434,913 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT1G05120.1 | Symbols:  | SNF2 domain-containing protein / helic...    54   2e-07

>AT1G05120.1 | Symbols:  | SNF2 domain-containing protein / helicase
           domain-containing protein / RING finger
           domain-containing protein | chr1:1471624-1476067 REVERSE
          Length = 833

 Score = 53.9 bits (128), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 25/30 (83%), Positives = 29/30 (96%)

Query: 293 RIVRFIIEDTVEERILQLQEKKELVFEGLV 322
           R+VRFIIE+TVEERIL+LQ+KKELVFEG V
Sbjct: 783 RVVRFIIENTVEERILRLQKKKELVFEGTV 812