Jatropha Genome Database

JcCB0155891.10
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCB0155891.10 + phase: 2 /pseudo/partial
         (98 letters)

Database: TAIR9_pep 
           33,410 sequences; 13,434,913 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT4G26910.3 | Symbols:  | 2-oxoacid dehydrogenase family protein...   152   6e-38
AT5G55070.1 | Symbols:  | 2-oxoacid dehydrogenase family protein...   152   6e-38
AT4G26910.1 | Symbols:  | 2-oxoacid dehydrogenase family protein...   150   1e-37
AT4G26910.2 | Symbols:  | 2-oxoacid dehydrogenase family protein...   150   1e-37
AT3G52200.1 | Symbols: LTA3 | LTA3; ATP binding / dihydrolipoyll...    50   3e-07
AT3G06850.2 | Symbols: BCE2, LTA1, DIN3 | BCE2; acetyltransferas...    46   4e-06
AT3G06850.1 | Symbols: BCE2, LTA1, DIN3 | BCE2; acetyltransferas...    46   4e-06

>AT4G26910.3 | Symbols:  | 2-oxoacid dehydrogenase family protein |
           chr4:13520127-13522055 REVERSE
          Length = 365

 Score =  152 bits (383), Expect = 6e-38,   Method: Composition-based stats.
 Identities = 70/79 (88%), Positives = 77/79 (97%)

Query: 20  GVYGSLLSTPIINPPQSAILGMHSIVSRPMVVDGNVVPRPMMYIALTYDHRLIDGREAVF 79
           GVYGSL+STPIINPPQSAILGMHSIVSRPMVV G+VVPRPMMY+ALTYDHRLIDGREAV+
Sbjct: 287 GVYGSLISTPIINPPQSAILGMHSIVSRPMVVGGSVVPRPMMYVALTYDHRLIDGREAVY 346

Query: 80  FLRRIKDVVEDTRRLLLDV 98
           FLRR+KDVVED +RLLLD+
Sbjct: 347 FLRRVKDVVEDPQRLLLDI 365


>AT5G55070.1 | Symbols:  | 2-oxoacid dehydrogenase family protein |
           chr5:22347637-22350409 FORWARD
          Length = 464

 Score =  152 bits (383), Expect = 6e-38,   Method: Composition-based stats.
 Identities = 70/79 (88%), Positives = 76/79 (96%)

Query: 20  GVYGSLLSTPIINPPQSAILGMHSIVSRPMVVDGNVVPRPMMYIALTYDHRLIDGREAVF 79
           GVYGSL+STPIINPPQSAILGMHSIV RPMVV G+VVPRPMMY+ALTYDHRLIDGREAV+
Sbjct: 386 GVYGSLISTPIINPPQSAILGMHSIVQRPMVVGGSVVPRPMMYVALTYDHRLIDGREAVY 445

Query: 80  FLRRIKDVVEDTRRLLLDV 98
           FLRRIKDVVED +RLLLD+
Sbjct: 446 FLRRIKDVVEDPQRLLLDI 464


>AT4G26910.1 | Symbols:  | 2-oxoacid dehydrogenase family protein |
           chr4:13520127-13522889 REVERSE
          Length = 464

 Score =  150 bits (379), Expect = 1e-37,   Method: Compositional matrix adjust.
 Identities = 70/79 (88%), Positives = 77/79 (97%)

Query: 20  GVYGSLLSTPIINPPQSAILGMHSIVSRPMVVDGNVVPRPMMYIALTYDHRLIDGREAVF 79
           GVYGSL+STPIINPPQSAILGMHSIVSRPMVV G+VVPRPMMY+ALTYDHRLIDGREAV+
Sbjct: 386 GVYGSLISTPIINPPQSAILGMHSIVSRPMVVGGSVVPRPMMYVALTYDHRLIDGREAVY 445

Query: 80  FLRRIKDVVEDTRRLLLDV 98
           FLRR+KDVVED +RLLLD+
Sbjct: 446 FLRRVKDVVEDPQRLLLDI 464


>AT4G26910.2 | Symbols:  | 2-oxoacid dehydrogenase family protein |
           chr4:13520127-13522889 REVERSE
          Length = 463

 Score =  150 bits (379), Expect = 1e-37,   Method: Compositional matrix adjust.
 Identities = 70/79 (88%), Positives = 77/79 (97%)

Query: 20  GVYGSLLSTPIINPPQSAILGMHSIVSRPMVVDGNVVPRPMMYIALTYDHRLIDGREAVF 79
           GVYGSL+STPIINPPQSAILGMHSIVSRPMVV G+VVPRPMMY+ALTYDHRLIDGREAV+
Sbjct: 385 GVYGSLISTPIINPPQSAILGMHSIVSRPMVVGGSVVPRPMMYVALTYDHRLIDGREAVY 444

Query: 80  FLRRIKDVVEDTRRLLLDV 98
           FLRR+KDVVED +RLLLD+
Sbjct: 445 FLRRVKDVVEDPQRLLLDI 463


>AT3G52200.1 | Symbols: LTA3 | LTA3; ATP binding /
           dihydrolipoyllysine-residue acetyltransferase |
           chr3:19360317-19366091 FORWARD
          Length = 637

 Score = 49.7 bits (117), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 32/87 (36%), Positives = 48/87 (55%), Gaps = 5/87 (5%)

Query: 15  NILTVGVYGSLLSTPIINPPQSAIL--GMHSIVSRPMV-VDGNVVPRPM--MYIALTYDH 69
           +I  +G+Y       IINPPQ+ IL  G  + V  P++ +DG   P  +  M + L+ DH
Sbjct: 551 SISNLGMYPVDNFCAIINPPQAGILAVGRGNKVVEPVIGLDGIEKPSVVTKMNVTLSADH 610

Query: 70  RLIDGREAVFFLRRIKDVVEDTRRLLL 96
           R+ DG+    F+  ++   ED RRLLL
Sbjct: 611 RIFDGQVGASFMSELRSNFEDVRRLLL 637


>AT3G06850.2 | Symbols: BCE2, LTA1, DIN3 | BCE2; acetyltransferase/
           alpha-ketoacid dehydrogenase/ dihydrolipoamide branched
           chain acyltransferase | chr3:2158212-2160465 REVERSE
          Length = 483

 Score = 46.2 bits (108), Expect = 4e-06,   Method: Composition-based stats.
 Identities = 24/81 (29%), Positives = 41/81 (50%), Gaps = 1/81 (1%)

Query: 19  VGVYGSLLSTPIINPPQSAILGMHSIVSRPMVV-DGNVVPRPMMYIALTYDHRLIDGREA 77
           +G  G    +P++N P+ AI+ +  I   P    +G V P  +M + +  DHR++DG   
Sbjct: 402 IGAIGGKFGSPLLNLPEVAIIALGRIEKVPKFSKEGTVYPASIMMVNIAADHRVLDGATV 461

Query: 78  VFFLRRIKDVVEDTRRLLLDV 98
             F  + K+ VE    L+L +
Sbjct: 462 ARFCCQWKEYVEKPELLMLQM 482


>AT3G06850.1 | Symbols: BCE2, LTA1, DIN3 | BCE2; acetyltransferase/
           alpha-ketoacid dehydrogenase/ dihydrolipoamide branched
           chain acyltransferase | chr3:2158212-2160465 REVERSE
          Length = 483

 Score = 46.2 bits (108), Expect = 4e-06,   Method: Composition-based stats.
 Identities = 24/81 (29%), Positives = 41/81 (50%), Gaps = 1/81 (1%)

Query: 19  VGVYGSLLSTPIINPPQSAILGMHSIVSRPMVV-DGNVVPRPMMYIALTYDHRLIDGREA 77
           +G  G    +P++N P+ AI+ +  I   P    +G V P  +M + +  DHR++DG   
Sbjct: 402 IGAIGGKFGSPLLNLPEVAIIALGRIEKVPKFSKEGTVYPASIMMVNIAADHRVLDGATV 461

Query: 78  VFFLRRIKDVVEDTRRLLLDV 98
             F  + K+ VE    L+L +
Sbjct: 462 ARFCCQWKEYVEKPELLMLQM 482