Jatropha Genome Database

JcCB0155101.20
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCB0155101.20 + phase: 0 /partial
         (93 letters)

Database: TAIR9_pep 
           33,410 sequences; 13,434,913 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT4G24810.2 | Symbols:  | ABC1 family protein | chr4:12786791-12...   155   4e-39
AT5G50330.1 | Symbols:  | ATP binding / protein kinase | chr5:20...   154   1e-38
AT5G50330.2 | Symbols:  | LOCATED IN: cellular_component unknown...   154   1e-38
AT4G24810.1 | Symbols:  | ABC1 family protein | chr4:12786791-12...    86   6e-18

>AT4G24810.2 | Symbols:  | ABC1 family protein |
          chr4:12786791-12789598 REVERSE
          Length = 481

 Score =  155 bits (393), Expect = 4e-39,   Method: Compositional matrix adjust.
 Identities = 69/87 (79%), Positives = 78/87 (89%)

Query: 5  VDFKDIQDKLSFHFRPWQRSFQFWVRAVDVYTGYKVFQLRVSLVKDVQKQEAMWERQHEL 64
          +DFK+IQ+KLS  FRPWQRSFQFW RA D+YTGYKVFQLR++ VKDV K E MWERQHEL
Sbjct: 4  IDFKEIQEKLSDGFRPWQRSFQFWARATDIYTGYKVFQLRMNFVKDVNKHEEMWERQHEL 63

Query: 65 AADKIYAMCSDLGGFFLKIAQIIGKPD 91
          AA K+Y+MCSDLGGFFLKIAQI+GKPD
Sbjct: 64 AAHKVYSMCSDLGGFFLKIAQILGKPD 90


>AT5G50330.1 | Symbols:  | ATP binding / protein kinase |
          chr5:20485406-20488563 REVERSE
          Length = 479

 Score =  154 bits (389), Expect = 1e-38,   Method: Compositional matrix adjust.
 Identities = 70/86 (81%), Positives = 78/86 (90%)

Query: 6  DFKDIQDKLSFHFRPWQRSFQFWVRAVDVYTGYKVFQLRVSLVKDVQKQEAMWERQHELA 65
          DFK+IQ+K+S  FRPWQRSFQFWVRA ++YTGYKVFQLRVSLVKD +KQE MWERQHE A
Sbjct: 5  DFKEIQEKISDSFRPWQRSFQFWVRATNIYTGYKVFQLRVSLVKDAKKQEEMWERQHEQA 64

Query: 66 ADKIYAMCSDLGGFFLKIAQIIGKPD 91
          ADKIY MCSDLGGFFLKIAQ++ KPD
Sbjct: 65 ADKIYFMCSDLGGFFLKIAQLLAKPD 90


>AT5G50330.2 | Symbols:  | LOCATED IN: cellular_component unknown;
          EXPRESSED IN: 19 plant structures; EXPRESSED DURING: 10
          growth stages; CONTAINS InterPro DOMAIN/s: ABC-1
          (InterPro:IPR004147), Protein kinase-like
          (InterPro:IPR011009); BEST Arabidopsis thaliana protein
          match is: ABC1 family protein (TAIR:AT4G24810.2); Has
          6571 Blast hits to 6564 proteins in 1101 species:
          Archae - 67; Bacteria - 2621; Metazoa - 344; Fungi -
          348; Plants - 348; Viruses - 10; Other Eukaryotes -
          2833 (source: NCBI BLink). | chr5:20485406-20488563
          REVERSE
          Length = 463

 Score =  154 bits (389), Expect = 1e-38,   Method: Compositional matrix adjust.
 Identities = 70/86 (81%), Positives = 78/86 (90%)

Query: 6  DFKDIQDKLSFHFRPWQRSFQFWVRAVDVYTGYKVFQLRVSLVKDVQKQEAMWERQHELA 65
          DFK+IQ+K+S  FRPWQRSFQFWVRA ++YTGYKVFQLRVSLVKD +KQE MWERQHE A
Sbjct: 5  DFKEIQEKISDSFRPWQRSFQFWVRATNIYTGYKVFQLRVSLVKDAKKQEEMWERQHEQA 64

Query: 66 ADKIYAMCSDLGGFFLKIAQIIGKPD 91
          ADKIY MCSDLGGFFLKIAQ++ KPD
Sbjct: 65 ADKIYFMCSDLGGFFLKIAQLLAKPD 90


>AT4G24810.1 | Symbols:  | ABC1 family protein |
          chr4:12786791-12789352 REVERSE
          Length = 438

 Score = 85.5 bits (210), Expect = 6e-18,   Method: Compositional matrix adjust.
 Identities = 37/48 (77%), Positives = 42/48 (87%)

Query: 45 VSLVKDVQKQEAMWERQHELAADKIYAMCSDLGGFFLKIAQIIGKPDW 92
          ++ VKDV K E MWERQHELAA K+Y+MCSDLGGFFLKIAQI+GKPD 
Sbjct: 1  MNFVKDVNKHEEMWERQHELAAHKVYSMCSDLGGFFLKIAQILGKPDL 48