Jatropha Genome Database

JcCB0155101.10
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCB0155101.10 + phase: 0 /partial/short
         (30 letters)

Database: TAIR9_pep 
           33,410 sequences; 13,434,913 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT4G24820.2 | Symbols:  | 26S proteasome regulatory subunit, put...    62   6e-11
AT4G24820.1 | Symbols:  | 26S proteasome regulatory subunit, put...    62   6e-11

>AT4G24820.2 | Symbols:  | 26S proteasome regulatory subunit,
           putative (RPN7) | chr4:12790471-12792599 REVERSE
          Length = 387

 Score = 62.4 bits (150), Expect = 6e-11,   Method: Composition-based stats.
 Identities = 30/30 (100%), Positives = 30/30 (100%)

Query: 1   PDAKNALYQATIKQGDFLLNRIQKLSRVID 30
           PDAKNALYQATIKQGDFLLNRIQKLSRVID
Sbjct: 357 PDAKNALYQATIKQGDFLLNRIQKLSRVID 386


>AT4G24820.1 | Symbols:  | 26S proteasome regulatory subunit,
           putative (RPN7) | chr4:12790471-12792599 REVERSE
          Length = 387

 Score = 62.4 bits (150), Expect = 6e-11,   Method: Composition-based stats.
 Identities = 30/30 (100%), Positives = 30/30 (100%)

Query: 1   PDAKNALYQATIKQGDFLLNRIQKLSRVID 30
           PDAKNALYQATIKQGDFLLNRIQKLSRVID
Sbjct: 357 PDAKNALYQATIKQGDFLLNRIQKLSRVID 386