Jatropha Genome Database

JcCB0154921.10
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCB0154921.10 + phase: 0 
         (362 letters)

Database: TAIR9_pep 
           33,410 sequences; 13,434,913 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT3G02150.2 | Symbols: PTF1, TFPD | PTF1 (PLASTID TRANSCRIPTION ...   139   3e-33
AT3G02150.1 | Symbols: PTF1, TCP13, TFPD | PTF1 (PLASTID TRANSCR...   139   4e-33
AT5G60970.1 | Symbols: TCP5 | TCP5 (TEOSINTE BRANCHED1, CYCLOIDE...   132   3e-31
AT5G08070.1 | Symbols: TCP17 | TCP17 (TCP DOMAIN PROTEIN 17); tr...   125   5e-29
AT1G30210.2 | Symbols: TCP24 | TCP24 (TEOSINTE BRANCHED1, CYCLOI...   109   3e-24
AT1G30210.1 | Symbols: TCP24, ATTCP24 | TCP24 (TEOSINTE BRANCHED...   109   3e-24
AT4G18390.2 | Symbols:  | TCP family transcription factor, putat...   104   1e-22
AT4G18390.1 | Symbols:  | TCP family transcription factor, putat...   104   1e-22
AT1G53230.1 | Symbols: TCP3 | TCP3; transcription factor | chr1:...    95   7e-20
AT3G15030.2 | Symbols: TCP4 | TCP4 (TCP family transcription fac...    91   1e-18
AT3G15030.1 | Symbols: TCP4, MEE35 | TCP4 (TCP family transcript...    91   1e-18
AT2G31070.1 | Symbols: TCP10 | TCP10 (TCP DOMAIN PROTEIN 10); tr...    86   3e-17
AT1G67260.2 | Symbols: TCP1 | TCP1; DNA binding / transcription ...    73   4e-13
AT1G67260.1 | Symbols: TCP1 | TCP1; DNA binding / transcription ...    72   4e-13
AT1G68800.1 | Symbols: BRC2, TCP12 | TCP12 (TCP DOMAIN PROTEIN 1...    70   2e-12
AT3G18550.2 | Symbols: BRC1, TCP18, ATTCP18 | BRC1 (BRANCHED 1);...    67   1e-11
AT3G18550.1 | Symbols: BRC1, TCP18, ATTCP18 | BRC1 (BRANCHED 1);...    67   1e-11

>AT3G02150.2 | Symbols: PTF1, TFPD | PTF1 (PLASTID TRANSCRIPTION
           FACTOR 1); transcription factor | chr3:391522-392589
           FORWARD
          Length = 355

 Score =  139 bits (350), Expect = 3e-33,   Method: Compositional matrix adjust.
 Identities = 61/70 (87%), Positives = 68/70 (97%)

Query: 41  WLRLKDPRIVRVSRAFGGKDRHSKVCTIRGLRDRRVRLSVPTAIQLYDLQDRLGLNQPSK 100
           W++ KDPRIVRVSRAFGGKDRHSKVCT+RGLRDRRVRLSVPTAIQLYDLQ+RLG++QPSK
Sbjct: 57  WMKSKDPRIVRVSRAFGGKDRHSKVCTLRGLRDRRVRLSVPTAIQLYDLQERLGVDQPSK 116

Query: 101 VVDWLLNAAK 110
            VDWLL+AAK
Sbjct: 117 AVDWLLDAAK 126


>AT3G02150.1 | Symbols: PTF1, TCP13, TFPD | PTF1 (PLASTID
           TRANSCRIPTION FACTOR 1); transcription factor |
           chr3:391522-392450 FORWARD
          Length = 278

 Score =  139 bits (349), Expect = 4e-33,   Method: Compositional matrix adjust.
 Identities = 66/96 (68%), Positives = 77/96 (80%), Gaps = 2/96 (2%)

Query: 41  WLRLKDPRIVRVSRAFGGKDRHSKVCTIRGLRDRRVRLSVPTAIQLYDLQDRLGLNQPSK 100
           W++ KDPRIVRVSRAFGGKDRHSKVCT+RGLRDRRVRLSVPTAIQLYDLQ+RLG++QPSK
Sbjct: 57  WMKSKDPRIVRVSRAFGGKDRHSKVCTLRGLRDRRVRLSVPTAIQLYDLQERLGVDQPSK 116

Query: 101 VVDWLLNAAKHXXXXXXXXXXXXVNFAL--NHQAML 134
            VDWLL+AAK              NF++  +HQ+ L
Sbjct: 117 AVDWLLDAAKEEIDELPPLPISPENFSIFNHHQSFL 152


>AT5G60970.1 | Symbols: TCP5 | TCP5 (TEOSINTE BRANCHED1, CYCLOIDEA
           AND PCF TRANSCRIPTION FACTOR 5); transcription factor |
           chr5:24535570-24536652 REVERSE
          Length = 360

 Score =  132 bits (332), Expect = 3e-31,   Method: Compositional matrix adjust.
 Identities = 58/67 (86%), Positives = 64/67 (95%)

Query: 44  LKDPRIVRVSRAFGGKDRHSKVCTIRGLRDRRVRLSVPTAIQLYDLQDRLGLNQPSKVVD 103
            ++PRIVRVSR FGGKDRHSKVCT+RGLRDRR+RLSVPTAIQLYDLQDRLGL+QPSKV+D
Sbjct: 49  FRNPRIVRVSRTFGGKDRHSKVCTVRGLRDRRIRLSVPTAIQLYDLQDRLGLSQPSKVID 108

Query: 104 WLLNAAK 110
           WLL AAK
Sbjct: 109 WLLEAAK 115


>AT5G08070.1 | Symbols: TCP17 | TCP17 (TCP DOMAIN PROTEIN 17);
           transcription factor | chr5:2584885-2585613 FORWARD
          Length = 242

 Score =  125 bits (313), Expect = 5e-29,   Method: Compositional matrix adjust.
 Identities = 56/69 (81%), Positives = 64/69 (92%)

Query: 43  RLKDPRIVRVSRAFGGKDRHSKVCTIRGLRDRRVRLSVPTAIQLYDLQDRLGLNQPSKVV 102
           R  +PRIVRVSRAFGGKDRHSKVCT+RGLRDRR+RLSV TAIQ+YDLQ+RLGL+QPSKV+
Sbjct: 18  RWNNPRIVRVSRAFGGKDRHSKVCTVRGLRDRRIRLSVMTAIQVYDLQERLGLSQPSKVI 77

Query: 103 DWLLNAAKH 111
           DWLL  AK+
Sbjct: 78  DWLLEVAKN 86


>AT1G30210.2 | Symbols: TCP24 | TCP24 (TEOSINTE BRANCHED1,
           CYCLOIDEA, AND PCF FAMILY 24); transcription factor |
           chr1:10628754-10629728 REVERSE
          Length = 324

 Score =  109 bits (272), Expect = 3e-24,   Method: Compositional matrix adjust.
 Identities = 49/62 (79%), Positives = 55/62 (88%)

Query: 48  RIVRVSRAFGGKDRHSKVCTIRGLRDRRVRLSVPTAIQLYDLQDRLGLNQPSKVVDWLLN 107
           RI+RVSRA GGKDRHSKV T +GLRDRR+RLSV TAIQ YDLQDRLG +QPSK V+WL+N
Sbjct: 40  RIIRVSRASGGKDRHSKVLTSKGLRDRRIRLSVATAIQFYDLQDRLGFDQPSKAVEWLIN 99

Query: 108 AA 109
           AA
Sbjct: 100 AA 101


>AT1G30210.1 | Symbols: TCP24, ATTCP24 | TCP24 (TEOSINTE BRANCHED1,
           CYCLOIDEA, AND PCF FAMILY 24); transcription factor |
           chr1:10628754-10629728 REVERSE
          Length = 324

 Score =  109 bits (272), Expect = 3e-24,   Method: Compositional matrix adjust.
 Identities = 49/62 (79%), Positives = 55/62 (88%)

Query: 48  RIVRVSRAFGGKDRHSKVCTIRGLRDRRVRLSVPTAIQLYDLQDRLGLNQPSKVVDWLLN 107
           RI+RVSRA GGKDRHSKV T +GLRDRR+RLSV TAIQ YDLQDRLG +QPSK V+WL+N
Sbjct: 40  RIIRVSRASGGKDRHSKVLTSKGLRDRRIRLSVATAIQFYDLQDRLGFDQPSKAVEWLIN 99

Query: 108 AA 109
           AA
Sbjct: 100 AA 101


>AT4G18390.2 | Symbols:  | TCP family transcription factor, putative
           | chr4:10163212-10164309 REVERSE
          Length = 365

 Score =  104 bits (259), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 47/63 (74%), Positives = 54/63 (85%)

Query: 48  RIVRVSRAFGGKDRHSKVCTIRGLRDRRVRLSVPTAIQLYDLQDRLGLNQPSKVVDWLLN 107
           RI+RVSRA GGKDRHSKV T +G RDRRVRLSV TA+Q YDLQDRLG +QPSK V+WL+ 
Sbjct: 32  RIIRVSRASGGKDRHSKVLTSKGPRDRRVRLSVSTALQFYDLQDRLGYDQPSKAVEWLIK 91

Query: 108 AAK 110
           AA+
Sbjct: 92  AAE 94


>AT4G18390.1 | Symbols:  | TCP family transcription factor, putative
           | chr4:10163212-10164309 REVERSE
          Length = 365

 Score =  104 bits (259), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 47/63 (74%), Positives = 54/63 (85%)

Query: 48  RIVRVSRAFGGKDRHSKVCTIRGLRDRRVRLSVPTAIQLYDLQDRLGLNQPSKVVDWLLN 107
           RI+RVSRA GGKDRHSKV T +G RDRRVRLSV TA+Q YDLQDRLG +QPSK V+WL+ 
Sbjct: 32  RIIRVSRASGGKDRHSKVLTSKGPRDRRVRLSVSTALQFYDLQDRLGYDQPSKAVEWLIK 91

Query: 108 AAK 110
           AA+
Sbjct: 92  AAE 94


>AT1G53230.1 | Symbols: TCP3 | TCP3; transcription factor |
           chr1:19850260-19851435 REVERSE
          Length = 391

 Score = 94.7 bits (234), Expect = 7e-20,   Method: Compositional matrix adjust.
 Identities = 41/59 (69%), Positives = 48/59 (81%)

Query: 52  VSRAFGGKDRHSKVCTIRGLRDRRVRLSVPTAIQLYDLQDRLGLNQPSKVVDWLLNAAK 110
           + R+ G KDRHSKVCT +G RDRRVRLS PTAIQ YD+QDRLG ++PSK VDWL+  AK
Sbjct: 43  IVRSTGRKDRHSKVCTAKGPRDRRVRLSAPTAIQFYDVQDRLGFDRPSKAVDWLITKAK 101


>AT3G15030.2 | Symbols: TCP4 | TCP4 (TCP family transcription factor
           4); transcription factor | chr3:5062308-5063570 FORWARD
          Length = 420

 Score = 90.9 bits (224), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 40/59 (67%), Positives = 47/59 (79%)

Query: 52  VSRAFGGKDRHSKVCTIRGLRDRRVRLSVPTAIQLYDLQDRLGLNQPSKVVDWLLNAAK 110
           + R+ G KDRHSKVCT +G RDRRVRLS  TAIQ YD+QDRLG ++PSK VDWL+  AK
Sbjct: 39  IVRSTGRKDRHSKVCTAKGPRDRRVRLSAHTAIQFYDVQDRLGFDRPSKAVDWLIKKAK 97


>AT3G15030.1 | Symbols: TCP4, MEE35 | TCP4 (TCP family transcription
           factor 4); transcription factor | chr3:5062308-5063570
           FORWARD
          Length = 420

 Score = 90.9 bits (224), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 40/59 (67%), Positives = 47/59 (79%)

Query: 52  VSRAFGGKDRHSKVCTIRGLRDRRVRLSVPTAIQLYDLQDRLGLNQPSKVVDWLLNAAK 110
           + R+ G KDRHSKVCT +G RDRRVRLS  TAIQ YD+QDRLG ++PSK VDWL+  AK
Sbjct: 39  IVRSTGRKDRHSKVCTAKGPRDRRVRLSAHTAIQFYDVQDRLGFDRPSKAVDWLIKKAK 97


>AT2G31070.1 | Symbols: TCP10 | TCP10 (TCP DOMAIN PROTEIN 10);
           transcription factor | chr2:13220984-13222069 REVERSE
          Length = 361

 Score = 85.9 bits (211), Expect = 3e-17,   Method: Compositional matrix adjust.
 Identities = 40/59 (67%), Positives = 46/59 (77%)

Query: 52  VSRAFGGKDRHSKVCTIRGLRDRRVRLSVPTAIQLYDLQDRLGLNQPSKVVDWLLNAAK 110
           + RA G KDRHSKV T +G RDRRVRLS  TAIQ YD+QDRLG ++PSK VDWL+  AK
Sbjct: 23  IIRATGRKDRHSKVFTSKGPRDRRVRLSAHTAIQFYDVQDRLGYDRPSKAVDWLIKKAK 81


>AT1G67260.2 | Symbols: TCP1 | TCP1; DNA binding / transcription
           factor | chr1:25168152-25169307 REVERSE
          Length = 351

 Score = 72.8 bits (177), Expect = 4e-13,   Method: Compositional matrix adjust.
 Identities = 31/64 (48%), Positives = 44/64 (68%)

Query: 47  PRIVRVSRAFGGKDRHSKVCTIRGLRDRRVRLSVPTAIQLYDLQDRLGLNQPSKVVDWLL 106
           P + +  +    KDRHSK+ T +G+RDRRVRLS+  A Q +DLQD LG ++ SK +DWLL
Sbjct: 76  PEVSKEIKKVVKKDRHSKIQTAQGIRDRRVRLSIGIARQFFDLQDMLGFDKASKTLDWLL 135

Query: 107 NAAK 110
             ++
Sbjct: 136 KKSR 139


>AT1G67260.1 | Symbols: TCP1 | TCP1; DNA binding / transcription
           factor | chr1:25168228-25169307 REVERSE
          Length = 359

 Score = 72.4 bits (176), Expect = 4e-13,   Method: Compositional matrix adjust.
 Identities = 31/64 (48%), Positives = 44/64 (68%)

Query: 47  PRIVRVSRAFGGKDRHSKVCTIRGLRDRRVRLSVPTAIQLYDLQDRLGLNQPSKVVDWLL 106
           P + +  +    KDRHSK+ T +G+RDRRVRLS+  A Q +DLQD LG ++ SK +DWLL
Sbjct: 76  PEVSKEIKKVVKKDRHSKIQTAQGIRDRRVRLSIGIARQFFDLQDMLGFDKASKTLDWLL 135

Query: 107 NAAK 110
             ++
Sbjct: 136 KKSR 139


>AT1G68800.1 | Symbols: BRC2, TCP12 | TCP12 (TCP DOMAIN PROTEIN 12);
           transcription factor | chr1:25847306-25848471 REVERSE
          Length = 356

 Score = 70.1 bits (170), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 29/61 (47%), Positives = 43/61 (70%)

Query: 50  VRVSRAFGGKDRHSKVCTIRGLRDRRVRLSVPTAIQLYDLQDRLGLNQPSKVVDWLLNAA 109
           V+  R    +DRHSK+CT +G RDRR+RLS+  A + +DLQD LG ++ SK ++WL + +
Sbjct: 104 VQWRRTVKKRDRHSKICTAQGPRDRRMRLSLQIARKFFDLQDMLGFDKASKTIEWLFSKS 163

Query: 110 K 110
           K
Sbjct: 164 K 164


>AT3G18550.2 | Symbols: BRC1, TCP18, ATTCP18 | BRC1 (BRANCHED 1);
           transcription factor | chr3:6383769-6385604 FORWARD
          Length = 429

 Score = 67.4 bits (163), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 31/66 (46%), Positives = 45/66 (68%), Gaps = 1/66 (1%)

Query: 45  KDPRIVRVSRAFGGKDRHSKVCTIRGLRDRRVRLSVPTAIQLYDLQDRLGLNQPSKVVDW 104
           +DP++ +  +     DRHSK+ T +G RDRR+RLS+  A +L+ LQD LG ++ SK V+W
Sbjct: 136 QDPKMKKAKKP-SRTDRHSKIKTAKGTRDRRMRLSLDVAKELFGLQDMLGFDKASKTVEW 194

Query: 105 LLNAAK 110
           LL  AK
Sbjct: 195 LLTQAK 200


>AT3G18550.1 | Symbols: BRC1, TCP18, ATTCP18 | BRC1 (BRANCHED 1);
           transcription factor | chr3:6383769-6385604 FORWARD
          Length = 433

 Score = 67.4 bits (163), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 31/66 (46%), Positives = 45/66 (68%), Gaps = 1/66 (1%)

Query: 45  KDPRIVRVSRAFGGKDRHSKVCTIRGLRDRRVRLSVPTAIQLYDLQDRLGLNQPSKVVDW 104
           +DP++ +  +     DRHSK+ T +G RDRR+RLS+  A +L+ LQD LG ++ SK V+W
Sbjct: 136 QDPKMKKAKKP-SRTDRHSKIKTAKGTRDRRMRLSLDVAKELFGLQDMLGFDKASKTVEW 194

Query: 105 LLNAAK 110
           LL  AK
Sbjct: 195 LLTQAK 200