Jatropha Genome Database

JcCB0154691.10
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCB0154691.10 - phase: 0 /partial
         (157 letters)

Database: TAIR9_pep 
           33,410 sequences; 13,434,913 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT1G69370.1 | Symbols: CM3, cm-3 | CM3 (chorismate mutase 3); ch...   236   3e-63
AT3G29200.1 | Symbols: CM1, ATCM1 | CM1 (CHORISMATE MUTASE 1); L...   231   1e-61
AT5G10870.1 | Symbols: ATCM2 | ATCM2 (chorismate mutase 2); chor...   205   9e-54

>AT1G69370.1 | Symbols: CM3, cm-3 | CM3 (chorismate mutase 3);
           chorismate mutase | chr1:26080098-26081559 FORWARD
          Length = 316

 Score =  236 bits (603), Expect = 3e-63,   Method: Compositional matrix adjust.
 Identities = 110/157 (70%), Positives = 132/157 (84%)

Query: 1   VLHPIADSININKKVWDLYFRDVLPRLVKDGNDGNCGSTAVCDTICLQVLSKRIHYGKFV 60
           VLH  A+SININKKVW++YF+ +LPRLVK G+DGNCGS A+CDT+CLQ+LSKRIH+GKFV
Sbjct: 160 VLHRCAESININKKVWNMYFKHLLPRLVKPGDDGNCGSAALCDTMCLQILSKRIHFGKFV 219

Query: 61  AEAKFRNSPDAYKAAIRAQDRDRLMDLLTYSKVEEAIKKRVEMKAITFGQEVTICFGDED 120
           AEAKFR +P AY+ AI+ QDR +LM LLTY  VEE +KKRVE+KA  FGQ++TI   + +
Sbjct: 220 AEAKFRENPAAYETAIKEQDRTQLMQLLTYETVEEVVKKRVEIKARIFGQDITINDPETE 279

Query: 121 TDPVYKIDPGLVAELYGEWIMPLTKEVQVEYLLRRLD 157
            DP YKI P LVA+LYGE IMPLTKEVQ+EYLLRRLD
Sbjct: 280 ADPSYKIQPSLVAKLYGERIMPLTKEVQIEYLLRRLD 316


>AT3G29200.1 | Symbols: CM1, ATCM1 | CM1 (CHORISMATE MUTASE 1);
           L-ascorbate peroxidase/ chorismate mutase |
           chr3:11164582-11166258 REVERSE
          Length = 340

 Score =  231 bits (589), Expect = 1e-61,   Method: Compositional matrix adjust.
 Identities = 113/164 (68%), Positives = 134/164 (81%), Gaps = 7/164 (4%)

Query: 1   VLHPIADSININKKVWDLYFRDVLPRLVKDGNDGNCGSTAVCDTICLQVLSKRIHYGKFV 60
           VLH  ADSININKK+W++YFRD++PRLVK G+DGN GSTAVCD ICLQ LSKRIHYGKFV
Sbjct: 177 VLHFAADSININKKIWNMYFRDLVPRLVKKGDDGNYGSTAVCDAICLQCLSKRIHYGKFV 236

Query: 61  AEAKFRNSPDAYKAAIRAQDRDRLMDLLTYSKVEEAIKKRVEMKAITFGQEVTICF---- 116
           AEAKF+ SP+AY++AI+AQD+D LMD+LT+  VE+AIKKRVEMK  T+GQEV +      
Sbjct: 237 AEAKFQASPEAYESAIKAQDKDALMDMLTFPTVEDAIKKRVEMKTRTYGQEVKVGMEEKE 296

Query: 117 ---GDEDTDPVYKIDPGLVAELYGEWIMPLTKEVQVEYLLRRLD 157
               + +   VYKI P LV +LYG+WIMPLTKEVQVEYLLRRLD
Sbjct: 297 EEEEEGNESHVYKISPILVGDLYGDWIMPLTKEVQVEYLLRRLD 340


>AT5G10870.1 | Symbols: ATCM2 | ATCM2 (chorismate mutase 2);
           chorismate mutase | chr5:3430691-3432272 REVERSE
          Length = 265

 Score =  205 bits (522), Expect = 9e-54,   Method: Compositional matrix adjust.
 Identities = 99/159 (62%), Positives = 123/159 (77%), Gaps = 3/159 (1%)

Query: 1   VLHPIADSININKKVWDLYFRDVLPRLVKDGNDGNCGSTAVCDTICLQVLSKRIHYGKFV 60
            LHP A S+NINK++WD+YF+++LP  VK G+DGN  STA  D  CLQ LS+RIHYGKFV
Sbjct: 108 ALHPKALSVNINKQIWDIYFKELLPLFVKPGDDGNYPSTAASDLACLQALSRRIHYGKFV 167

Query: 61  AEAKFRNSPDAYKAAIRAQDRDRLMDLLTYSKVEEAIKKRVEMKAITFGQEVTI--CFGD 118
           AE KFR++P  Y+ AIRAQDR+ LM LLT+ KVEE +KKRV+ KA TFGQEV     +GD
Sbjct: 168 AEVKFRDAPQDYEPAIRAQDREALMKLLTFEKVEEMVKKRVQKKAETFGQEVKFNSGYGD 227

Query: 119 EDTDPVYKIDPGLVAELYGEWIMPLTKEVQVEYLLRRLD 157
           E +   YK+DP L + +YGEW++PLTK V+VEYLLRRLD
Sbjct: 228 E-SKKKYKVDPLLASRIYGEWLIPLTKLVEVEYLLRRLD 265