Jatropha Genome Database
- JcCB0153301.10
BLASTP 2.2.23 [Feb-03-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= JcCB0153301.10 + phase: 0 /partial
(546 letters)
Database: TAIR9_pep
33,410 sequences; 13,434,913 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AT1G19220.1 | Symbols: ARF19, IAA22, ARF11 | ARF19 (AUXIN RESPON... 473 e-133
AT5G20730.2 | Symbols: NPH4, MSG1, IAA21, ARF7, TIR5, BIP | NPH4... 464 e-131
AT5G20730.1 | Symbols: NPH4, MSG1, IAA21, ARF7, TIR5, BIP | NPH4... 464 e-131
AT5G20730.3 | Symbols: NPH4, MSG1, IAA21, ARF7, TIR5, BIP, IAA23... 424 e-119
AT1G19850.1 | Symbols: MP, ARF5, IAA24 | MP (MONOPTEROS); transc... 151 9e-37
AT1G30330.2 | Symbols: ARF6 | ARF6 (AUXIN RESPONSE FACTOR 6); tr... 132 5e-31
AT1G30330.1 | Symbols: ARF6 | ARF6 (AUXIN RESPONSE FACTOR 6); tr... 132 6e-31
AT5G37020.1 | Symbols: ARF8, ATARF8 | ARF8 (AUXIN RESPONSE FACTO... 126 5e-29
AT5G37020.2 | Symbols: ARF8 | ARF8 (AUXIN RESPONSE FACTOR 8); tr... 107 2e-23
AT5G62000.3 | Symbols: ARF2, ARF1-BP, HSS | ARF2 (AUXIN RESPONSE... 96 7e-20
AT5G62000.2 | Symbols: ARF2, ARF1-BP, HSS | ARF2 (AUXIN RESPONSE... 96 7e-20
AT5G62000.1 | Symbols: ARF2, ARF1-BP, HSS | ARF2 (AUXIN RESPONSE... 96 7e-20
AT5G60450.1 | Symbols: ARF4 | ARF4 (AUXIN RESPONSE FACTOR 4); tr... 96 8e-20
AT1G59750.3 | Symbols: ARF1 | ARF1 (AUXIN RESPONSE FACTOR 1); DN... 91 2e-18
AT1G59750.1 | Symbols: ARF1 | ARF1 (AUXIN RESPONSE FACTOR 1); DN... 91 2e-18
AT1G59750.2 | Symbols: ARF1 | ARF1 (AUXIN RESPONSE FACTOR 1); DN... 91 2e-18
AT4G23980.2 | Symbols: ARF9 | ARF9 (AUXIN RESPONSE FACTOR 9); tr... 88 1e-17
AT4G23980.1 | Symbols: ARF9 | ARF9 (AUXIN RESPONSE FACTOR 9); tr... 88 1e-17
AT2G46530.2 | Symbols: ARF11 | ARF11 (AUXIN RESPONSE FACTOR 11);... 87 3e-17
AT2G46530.1 | Symbols: ARF11 | ARF11 (AUXIN RESPONSE FACTOR 11);... 87 4e-17
AT2G46530.3 | Symbols: ARF11 | ARF11 (AUXIN RESPONSE FACTOR 11);... 86 4e-17
AT3G61830.1 | Symbols: ARF18 | ARF18 (AUXIN RESPONSE FACTOR 18);... 86 5e-17
AT1G35540.1 | Symbols: ARF14 | ARF14 (AUXIN RESPONSE FACTOR 14);... 79 5e-15
AT1G34410.1 | Symbols: ARF21 | ARF21 (AUXIN RESPONSE FACTOR 21);... 78 1e-14
AT1G35240.1 | Symbols: ARF20 | ARF20 (AUXIN RESPONSE FACTOR 20);... 77 3e-14
AT1G34310.1 | Symbols: ARF12 | ARF12 (AUXIN RESPONSE FACTOR 12);... 75 8e-14
AT1G35520.1 | Symbols: ARF15 | ARF15 (AUXIN RESPONSE FACTOR 15);... 75 1e-13
AT1G34390.1 | Symbols: ARF22 | ARF22 (AUXIN RESPONSE FACTOR 22);... 72 1e-12
AT1G34170.3 | Symbols: | transcription factor | chr1:12443578-1... 67 4e-11
AT5G43700.1 | Symbols: ATAUX2-11, IAA4 | ATAUX2-11 (AUXIN INDUCI... 61 2e-09
AT5G25890.1 | Symbols: IAA28, IAR2 | IAA28 (INDOLE-3-ACETIC ACID... 57 3e-08
AT2G33310.3 | Symbols: IAA13 | IAA13; transcription factor | chr... 55 8e-08
AT2G33310.1 | Symbols: IAA13 | IAA13; transcription factor | chr... 55 8e-08
AT2G33310.2 | Symbols: IAA13 | IAA13; transcription factor | chr... 55 8e-08
AT1G04550.2 | Symbols: IAA12, BDL | IAA12 (AUXIN-INDUCED PROTEIN... 55 2e-07
AT3G16500.1 | Symbols: PAP1, IAA26 | PAP1 (PHYTOCHROME-ASSOCIATE... 55 2e-07
AT4G29080.1 | Symbols: PAP2, IAA27 | PAP2 (PHYTOCHROME-ASSOCIATE... 54 2e-07
AT4G28640.1 | Symbols: IAA11 | IAA11 (INDOLE-3-ACETIC ACID INDUC... 54 2e-07
AT1G04240.1 | Symbols: SHY2, IAA3 | SHY2 (SHORT HYPOCOTYL 2); tr... 54 2e-07
AT4G28640.2 | Symbols: IAA11 | IAA11 (INDOLE-3-ACETIC ACID INDUC... 53 5e-07
AT1G51950.1 | Symbols: IAA18 | IAA18 (INDOLE-3-ACETIC ACID INDUC... 52 7e-07
AT3G62100.1 | Symbols: IAA30 | IAA30 (INDOLE-3-ACETIC ACID INDUC... 52 1e-06
AT3G15540.1 | Symbols: IAA19, MSG2 | IAA19 (INDOLE-3-ACETIC ACID... 51 2e-06
AT2G46990.1 | Symbols: IAA20 | IAA20 (INDOLE-3-ACETIC ACID INDUC... 50 5e-06
>AT1G19220.1 | Symbols: ARF19, IAA22, ARF11 | ARF19 (AUXIN RESPONSE
FACTOR 19); DNA binding / transcription factor |
chr1:6628395-6632779 REVERSE
Length = 1086
Score = 473 bits (1218), Expect = e-133, Method: Compositional matrix adjust.
Identities = 249/392 (63%), Positives = 292/392 (74%), Gaps = 24/392 (6%)
Query: 174 GSNSFSTAALMQSQSFPVSQHHALQKS-----PTIRAHSTLTDGDAPSCSTSPSTNNC-- 226
G+NSF + MQ VS Q S R+HS TDG+APSCSTSPS NN
Sbjct: 700 GNNSFPASTFMQPPQIQVSPQQQGQMSNKNLVAAGRSHSGHTDGEAPSCSTSPSANNTGH 759
Query: 227 -QIAPSNFLNRNQQ---APAILMGDSVIEPATNLVQELNNKSDIRVKHEFPGSK-ASDQL 281
++P+NFL+RNQQ A ++ DSV E A+N VQEL K++ R+ K A +
Sbjct: 760 DNVSPTNFLSRNQQQGQAASVSASDSVFERASNPVQELYTKTESRISQGMMNMKSAGEHF 819
Query: 282 KYKGTITDQLEASSSGTSYCLDA-GNIQQN--FSLPTFGLDGDVQSH-PRNSLPFATNIE 337
++K +TDQ++ S++GT+YC D G +QQ F LP+FG DGD QSH PRN+L F N+E
Sbjct: 820 RFKSAVTDQIDVSTAGTTYCPDVVGPVQQQQTFPLPSFGFDGDCQSHHPRNNLAFPGNLE 879
Query: 338 SLAPDTLLTRGYDSQKDLQNLLANYGGTPRDIETELSTAAISSQSFGVPIMPFKPGCSND 397
++ D L SQKD QNL+ NYG TPRDIETELS+AAISSQSFG+P +PFKPGCSN+
Sbjct: 880 AVTSDPLY-----SQKDFQNLVPNYGNTPRDIETELSSAAISSQSFGIPSIPFKPGCSNE 934
Query: 398 VA-INDSGVLNGG-LWANQTQRMRTYTKVQKRGSVGRSIDVTRYKGYDELRHDLARMFGI 455
V INDSG++NGG LW NQTQRMRTYTKVQKRGSVGRSIDVTRY GYDELRHDLARMFGI
Sbjct: 935 VGGINDSGIMNGGGLWPNQTQRMRTYTKVQKRGSVGRSIDVTRYSGYDELRHDLARMFGI 994
Query: 456 EGQLEDPQSSDWKLVYVDHENDILLVGDDPWEEFVSCVQSIKILSSAEVQQMSLDGDLGS 515
EGQLEDP +SDWKLVY DHENDILLVGDDPWEEFV+CVQ+IKILSS EVQQMSLDGDL +
Sbjct: 995 EGQLEDPLTSDWKLVYTDHENDILLVGDDPWEEFVNCVQNIKILSSVEVQQMSLDGDLAA 1054
Query: 516 MPVPNQACSGTDSGNAWRGHYDDNS-AASFNR 546
+P NQACS TDSGNAW+ HY+D S AASFNR
Sbjct: 1055 IPTTNQACSETDSGNAWKVHYEDTSAAASFNR 1086
>AT5G20730.2 | Symbols: NPH4, MSG1, IAA21, ARF7, TIR5, BIP | NPH4
(NON-PHOTOTROPHIC HYPOCOTYL); DNA binding / transcription
activator/ transcription factor/ transcription regulator
| chr5:7016704-7021504 REVERSE
Length = 1164
Score = 464 bits (1195), Expect = e-131, Method: Compositional matrix adjust.
Identities = 254/371 (68%), Positives = 292/371 (78%), Gaps = 20/371 (5%)
Query: 184 MQSQSFPVSQHHALQKSPT---IRAHSTLTDG-DAPSCSTSPSTNNCQIAPSNFLNRNQQ 239
+Q VS+ Q P ++A+S +TDG DAPS STSPSTNNCQI+ S FLNR+Q
Sbjct: 806 LQPPQMLVSRPQEKQNPPVGGGVKAYSGITDGGDAPSSSTSPSTNNCQISSSGFLNRSQS 865
Query: 240 APAILMGDSVIEPATNLVQELNNKSDIRVKHEFPGSKASDQLKYKGTITD-QLEASSSGT 298
PAIL+ D+ I+ + NLVQ+L +KSD+R+K E G Q K K ++TD QLEAS+SGT
Sbjct: 866 GPAILIPDAAIDMSGNLVQDLYSKSDMRLKQELVG-----QQKSKASLTDHQLEASASGT 920
Query: 299 SYCLDAG--NIQQNFSLPTFGLDGDVQSHPRNSLPFATNIES-LAPDTLLTRGYDSQKDL 355
SY LD G N QQNF PTFGLDGD RNSL N+++ PDTLL+RGYDSQKDL
Sbjct: 921 SYGLDGGENNRQQNFLAPTFGLDGDS----RNSLLGGANVDNGFVPDTLLSRGYDSQKDL 976
Query: 356 QNLLANYGGTPRDIETELSTAAISSQSFGVPIMPFKPGCSNDVAINDSGVLNGGLWANQT 415
QN+L+NYGG DI TE+ST+A+ +QSFGVP +P SND+A+ND+GVL GGLW QT
Sbjct: 977 QNMLSNYGGVTNDIGTEMSTSAVRTQSFGVPNVP---AISNDLAVNDAGVLGGGLWPAQT 1033
Query: 416 QRMRTYTKVQKRGSVGRSIDVTRYKGYDELRHDLARMFGIEGQLEDPQSSDWKLVYVDHE 475
QRMRTYTKVQKRGSVGRSIDV RY+GYDELRHDLARMFGIEGQLEDPQ+SDWKLVYVDHE
Sbjct: 1034 QRMRTYTKVQKRGSVGRSIDVNRYRGYDELRHDLARMFGIEGQLEDPQTSDWKLVYVDHE 1093
Query: 476 NDILLVGDDPWEEFVSCVQSIKILSSAEVQQMSLDGDLGSMPVPNQACSGTDSGNAWRGH 535
NDILLVGDDPWEEFV+CVQSIKILSSAEVQQMSLDG+ +PV NQACSG DSGNAWRGH
Sbjct: 1094 NDILLVGDDPWEEFVNCVQSIKILSSAEVQQMSLDGNFAGVPVTNQACSGGDSGNAWRGH 1153
Query: 536 YDDNSAASFNR 546
YDDNSA SFNR
Sbjct: 1154 YDDNSATSFNR 1164
>AT5G20730.1 | Symbols: NPH4, MSG1, IAA21, ARF7, TIR5, BIP | NPH4
(NON-PHOTOTROPHIC HYPOCOTYL); DNA binding / transcription
activator/ transcription factor/ transcription regulator
| chr5:7016704-7021504 REVERSE
Length = 1165
Score = 464 bits (1195), Expect = e-131, Method: Compositional matrix adjust.
Identities = 254/371 (68%), Positives = 292/371 (78%), Gaps = 20/371 (5%)
Query: 184 MQSQSFPVSQHHALQKSPT---IRAHSTLTDG-DAPSCSTSPSTNNCQIAPSNFLNRNQQ 239
+Q VS+ Q P ++A+S +TDG DAPS STSPSTNNCQI+ S FLNR+Q
Sbjct: 807 LQPPQMLVSRPQEKQNPPVGGGVKAYSGITDGGDAPSSSTSPSTNNCQISSSGFLNRSQS 866
Query: 240 APAILMGDSVIEPATNLVQELNNKSDIRVKHEFPGSKASDQLKYKGTITD-QLEASSSGT 298
PAIL+ D+ I+ + NLVQ+L +KSD+R+K E G Q K K ++TD QLEAS+SGT
Sbjct: 867 GPAILIPDAAIDMSGNLVQDLYSKSDMRLKQELVG-----QQKSKASLTDHQLEASASGT 921
Query: 299 SYCLDAG--NIQQNFSLPTFGLDGDVQSHPRNSLPFATNIES-LAPDTLLTRGYDSQKDL 355
SY LD G N QQNF PTFGLDGD RNSL N+++ PDTLL+RGYDSQKDL
Sbjct: 922 SYGLDGGENNRQQNFLAPTFGLDGDS----RNSLLGGANVDNGFVPDTLLSRGYDSQKDL 977
Query: 356 QNLLANYGGTPRDIETELSTAAISSQSFGVPIMPFKPGCSNDVAINDSGVLNGGLWANQT 415
QN+L+NYGG DI TE+ST+A+ +QSFGVP +P SND+A+ND+GVL GGLW QT
Sbjct: 978 QNMLSNYGGVTNDIGTEMSTSAVRTQSFGVPNVP---AISNDLAVNDAGVLGGGLWPAQT 1034
Query: 416 QRMRTYTKVQKRGSVGRSIDVTRYKGYDELRHDLARMFGIEGQLEDPQSSDWKLVYVDHE 475
QRMRTYTKVQKRGSVGRSIDV RY+GYDELRHDLARMFGIEGQLEDPQ+SDWKLVYVDHE
Sbjct: 1035 QRMRTYTKVQKRGSVGRSIDVNRYRGYDELRHDLARMFGIEGQLEDPQTSDWKLVYVDHE 1094
Query: 476 NDILLVGDDPWEEFVSCVQSIKILSSAEVQQMSLDGDLGSMPVPNQACSGTDSGNAWRGH 535
NDILLVGDDPWEEFV+CVQSIKILSSAEVQQMSLDG+ +PV NQACSG DSGNAWRGH
Sbjct: 1095 NDILLVGDDPWEEFVNCVQSIKILSSAEVQQMSLDGNFAGVPVTNQACSGGDSGNAWRGH 1154
Query: 536 YDDNSAASFNR 546
YDDNSA SFNR
Sbjct: 1155 YDDNSATSFNR 1165
>AT5G20730.3 | Symbols: NPH4, MSG1, IAA21, ARF7, TIR5, BIP, IAA23,
IAA25 | NPH4 (NON-PHOTOTROPHIC HYPOCOTYL); DNA binding /
transcription activator/ transcription factor/
transcription regulator | chr5:7016704-7021504 REVERSE
Length = 1150
Score = 424 bits (1091), Expect = e-119, Method: Compositional matrix adjust.
Identities = 237/355 (66%), Positives = 275/355 (77%), Gaps = 20/355 (5%)
Query: 184 MQSQSFPVSQHHALQKSPT---IRAHSTLTDG-DAPSCSTSPSTNNCQIAPSNFLNRNQQ 239
+Q VS+ Q P ++A+S +TDG DAPS STSPSTNNCQI+ S FLNR+Q
Sbjct: 807 LQPPQMLVSRPQEKQNPPVGGGVKAYSGITDGGDAPSSSTSPSTNNCQISSSGFLNRSQS 866
Query: 240 APAILMGDSVIEPATNLVQELNNKSDIRVKHEFPGSKASDQLKYKGTITD-QLEASSSGT 298
PAIL+ D+ I+ + NLVQ+L +KSD+R+K E G Q K K ++TD QLEAS+SGT
Sbjct: 867 GPAILIPDAAIDMSGNLVQDLYSKSDMRLKQELVG-----QQKSKASLTDHQLEASASGT 921
Query: 299 SYCLDAG--NIQQNFSLPTFGLDGDVQSHPRNSLPFATNIES-LAPDTLLTRGYDSQKDL 355
SY LD G N QQNF PTFGLDGD RNSL N+++ PDTLL+RGYDSQKDL
Sbjct: 922 SYGLDGGENNRQQNFLAPTFGLDGDS----RNSLLGGANVDNGFVPDTLLSRGYDSQKDL 977
Query: 356 QNLLANYGGTPRDIETELSTAAISSQSFGVPIMPFKPGCSNDVAINDSGVLNGGLWANQT 415
QN+L+NYGG DI TE+ST+A+ +QSFGVP +P SND+A+ND+GVL GGLW QT
Sbjct: 978 QNMLSNYGGVTNDIGTEMSTSAVRTQSFGVPNVP---AISNDLAVNDAGVLGGGLWPAQT 1034
Query: 416 QRMRTYTKVQKRGSVGRSIDVTRYKGYDELRHDLARMFGIEGQLEDPQSSDWKLVYVDHE 475
QRMRTYTKVQKRGSVGRSIDV RY+GYDELRHDLARMFGIEGQLEDPQ+SDWKLVYVDHE
Sbjct: 1035 QRMRTYTKVQKRGSVGRSIDVNRYRGYDELRHDLARMFGIEGQLEDPQTSDWKLVYVDHE 1094
Query: 476 NDILLVGDDPWEEFVSCVQSIKILSSAEVQQMSLDGDLGSMPVPNQACSGTDSGN 530
NDILLVGDDPWEEFV+CVQSIKILSSAEVQQMSLDG+ +PV NQACSG S N
Sbjct: 1095 NDILLVGDDPWEEFVNCVQSIKILSSAEVQQMSLDGNFAGVPVTNQACSGATSFN 1149
>AT1G19850.1 | Symbols: MP, ARF5, IAA24 | MP (MONOPTEROS);
transcription factor | chr1:6887353-6891182 FORWARD
Length = 902
Score = 151 bits (382), Expect = 9e-37, Method: Compositional matrix adjust.
Identities = 80/154 (51%), Positives = 107/154 (69%), Gaps = 9/154 (5%)
Query: 367 RDIETELSTAAIS-SQSFGVPIMPFKPG----CSNDVAINDSGVL---NGGLWAN-QTQR 417
+D+++++++A+ + SQ+F P G S++V +D + G W T R
Sbjct: 732 QDVQSQITSASFADSQAFSRQDFPDNSGGTGTSSSNVDFDDCSLRQNSKGSSWQKIATPR 791
Query: 418 MRTYTKVQKRGSVGRSIDVTRYKGYDELRHDLARMFGIEGQLEDPQSSDWKLVYVDHEND 477
+RTYTKVQK GSVGRSIDVT +K Y+EL+ + MFG+EG L PQSS WKLVYVD+E+D
Sbjct: 792 VRTYTKVQKTGSVGRSIDVTSFKDYEELKSAIECMFGLEGLLTHPQSSGWKLVYVDYESD 851
Query: 478 ILLVGDDPWEEFVSCVQSIKILSSAEVQQMSLDG 511
+LLVGDDPWEEFV CV+ I+ILS EVQQMS +G
Sbjct: 852 VLLVGDDPWEEFVGCVRCIRILSPTEVQQMSEEG 885
>AT1G30330.2 | Symbols: ARF6 | ARF6 (AUXIN RESPONSE FACTOR 6);
transcription factor | chr1:10686125-10690036 REVERSE
Length = 935
Score = 132 bits (332), Expect = 5e-31, Method: Compositional matrix adjust.
Identities = 59/92 (64%), Positives = 71/92 (77%)
Query: 420 TYTKVQKRGSVGRSIDVTRYKGYDELRHDLARMFGIEGQLEDPQSSDWKLVYVDHENDIL 479
T+ KV K GS GRS+D++++ Y ELR +LARMFG+EGQLEDP S W+LV+VD END+L
Sbjct: 797 TFVKVYKSGSFGRSLDISKFSSYHELRSELARMFGLEGQLEDPVRSGWQLVFVDRENDVL 856
Query: 480 LVGDDPWEEFVSCVQSIKILSSAEVQQMSLDG 511
L+GDDPW EFVS V IKILS EVQQM G
Sbjct: 857 LLGDDPWPEFVSSVWCIKILSPQEVQQMGKRG 888
>AT1G30330.1 | Symbols: ARF6 | ARF6 (AUXIN RESPONSE FACTOR 6);
transcription factor | chr1:10686125-10690036 REVERSE
Length = 933
Score = 132 bits (332), Expect = 6e-31, Method: Compositional matrix adjust.
Identities = 59/92 (64%), Positives = 71/92 (77%)
Query: 420 TYTKVQKRGSVGRSIDVTRYKGYDELRHDLARMFGIEGQLEDPQSSDWKLVYVDHENDIL 479
T+ KV K GS GRS+D++++ Y ELR +LARMFG+EGQLEDP S W+LV+VD END+L
Sbjct: 795 TFVKVYKSGSFGRSLDISKFSSYHELRSELARMFGLEGQLEDPVRSGWQLVFVDRENDVL 854
Query: 480 LVGDDPWEEFVSCVQSIKILSSAEVQQMSLDG 511
L+GDDPW EFVS V IKILS EVQQM G
Sbjct: 855 LLGDDPWPEFVSSVWCIKILSPQEVQQMGKRG 886
>AT5G37020.1 | Symbols: ARF8, ATARF8 | ARF8 (AUXIN RESPONSE FACTOR
8); transcription factor | chr5:14630151-14634106
FORWARD
Length = 811
Score = 126 bits (316), Expect = 5e-29, Method: Compositional matrix adjust.
Identities = 58/108 (53%), Positives = 76/108 (70%)
Query: 405 VLNGGLWANQTQRMRTYTKVQKRGSVGRSIDVTRYKGYDELRHDLARMFGIEGQLEDPQS 464
+L+G N + + + + KV K GSVGRS+D++R+ Y ELR +L +MF IEG LEDP
Sbjct: 691 LLHGAGQINSSNQTKNFVKVYKSGSVGRSLDISRFSSYHELREELGKMFAIEGLLEDPLR 750
Query: 465 SDWKLVYVDHENDILLVGDDPWEEFVSCVQSIKILSSAEVQQMSLDGD 512
S W+LV+VD ENDILL+GDDPWE FV+ V IKILS +V QM G+
Sbjct: 751 SGWQLVFVDKENDILLLGDDPWESFVNNVWYIKILSPEDVHQMGDHGE 798
>AT5G37020.2 | Symbols: ARF8 | ARF8 (AUXIN RESPONSE FACTOR 8);
transcription factor | chr5:14630151-14633916 FORWARD
Length = 773
Score = 107 bits (266), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 46/83 (55%), Positives = 61/83 (73%)
Query: 405 VLNGGLWANQTQRMRTYTKVQKRGSVGRSIDVTRYKGYDELRHDLARMFGIEGQLEDPQS 464
+L+G N + + + + KV K GSVGRS+D++R+ Y ELR +L +MF IEG LEDP
Sbjct: 691 LLHGAGQINSSNQTKNFVKVYKSGSVGRSLDISRFSSYHELREELGKMFAIEGLLEDPLR 750
Query: 465 SDWKLVYVDHENDILLVGDDPWE 487
S W+LV+VD ENDILL+GDDPWE
Sbjct: 751 SGWQLVFVDKENDILLLGDDPWE 773
>AT5G62000.3 | Symbols: ARF2, ARF1-BP, HSS | ARF2 (AUXIN RESPONSE
FACTOR 2); protein binding / transcription factor |
chr5:24910859-24914680 FORWARD
Length = 859
Score = 95.5 bits (236), Expect = 7e-20, Method: Compositional matrix adjust.
Identities = 43/95 (45%), Positives = 67/95 (70%), Gaps = 2/95 (2%)
Query: 414 QTQRMRTYTKVQKRG-SVGRSIDVTRYKGYDELRHDLARMFGIEGQLEDPQSSDWKLVYV 472
+T R+ TKV K+G ++GRS+D+++++ Y+EL +L R+F G+L P+ DW +VY
Sbjct: 728 KTNSSRSCTKVHKQGIALGRSVDLSKFQNYEELVAELDRLFEFNGELMAPKK-DWLIVYT 786
Query: 473 DHENDILLVGDDPWEEFVSCVQSIKILSSAEVQQM 507
D END++LVGDDPW+EF V+ I I + EV++M
Sbjct: 787 DEENDMMLVGDDPWQEFCCMVRKIFIYTKEEVRKM 821
>AT5G62000.2 | Symbols: ARF2, ARF1-BP, HSS | ARF2 (AUXIN RESPONSE
FACTOR 2); protein binding / transcription factor |
chr5:24910859-24914680 FORWARD
Length = 859
Score = 95.5 bits (236), Expect = 7e-20, Method: Compositional matrix adjust.
Identities = 43/95 (45%), Positives = 67/95 (70%), Gaps = 2/95 (2%)
Query: 414 QTQRMRTYTKVQKRG-SVGRSIDVTRYKGYDELRHDLARMFGIEGQLEDPQSSDWKLVYV 472
+T R+ TKV K+G ++GRS+D+++++ Y+EL +L R+F G+L P+ DW +VY
Sbjct: 728 KTNSSRSCTKVHKQGIALGRSVDLSKFQNYEELVAELDRLFEFNGELMAPKK-DWLIVYT 786
Query: 473 DHENDILLVGDDPWEEFVSCVQSIKILSSAEVQQM 507
D END++LVGDDPW+EF V+ I I + EV++M
Sbjct: 787 DEENDMMLVGDDPWQEFCCMVRKIFIYTKEEVRKM 821
>AT5G62000.1 | Symbols: ARF2, ARF1-BP, HSS | ARF2 (AUXIN RESPONSE
FACTOR 2); protein binding / transcription factor |
chr5:24910859-24914680 FORWARD
Length = 859
Score = 95.5 bits (236), Expect = 7e-20, Method: Compositional matrix adjust.
Identities = 43/95 (45%), Positives = 67/95 (70%), Gaps = 2/95 (2%)
Query: 414 QTQRMRTYTKVQKRG-SVGRSIDVTRYKGYDELRHDLARMFGIEGQLEDPQSSDWKLVYV 472
+T R+ TKV K+G ++GRS+D+++++ Y+EL +L R+F G+L P+ DW +VY
Sbjct: 728 KTNSSRSCTKVHKQGIALGRSVDLSKFQNYEELVAELDRLFEFNGELMAPKK-DWLIVYT 786
Query: 473 DHENDILLVGDDPWEEFVSCVQSIKILSSAEVQQM 507
D END++LVGDDPW+EF V+ I I + EV++M
Sbjct: 787 DEENDMMLVGDDPWQEFCCMVRKIFIYTKEEVRKM 821
>AT5G60450.1 | Symbols: ARF4 | ARF4 (AUXIN RESPONSE FACTOR 4);
transcription factor | chr5:24308558-24312187 REVERSE
Length = 788
Score = 95.5 bits (236), Expect = 8e-20, Method: Compositional matrix adjust.
Identities = 43/93 (46%), Positives = 64/93 (68%), Gaps = 2/93 (2%)
Query: 414 QTQRMRTYTKVQKRGS-VGRSIDVTRYKGYDELRHDLARMFGIEGQLEDPQSSDWKLVYV 472
Q+ R TKV K+GS VGR+ID++R GYD+L +L R+F +EG L DP+ W+++Y
Sbjct: 660 QSSSKRICTKVHKQGSQVGRAIDLSRLNGYDDLLMELERLFNMEGLLRDPEKG-WRILYT 718
Query: 473 DHENDILLVGDDPWEEFVSCVQSIKILSSAEVQ 505
D END+++VGDDPW +F + V I + + EV+
Sbjct: 719 DSENDMMVVGDDPWHDFCNVVWKIHLYTKEEVE 751
>AT1G59750.3 | Symbols: ARF1 | ARF1 (AUXIN RESPONSE FACTOR 1); DNA
binding / transcription factor | chr1:21980414-21984193
FORWARD
Length = 665
Score = 90.5 bits (223), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 43/103 (41%), Positives = 70/103 (67%), Gaps = 2/103 (1%)
Query: 413 NQTQRMRTYTKVQKRGS-VGRSIDVTRYKGYDELRHDLARMFGIEGQLEDPQSSDWKLVY 471
+Q++++R+ TKV +GS VGR+ID+TR + Y++L L MF I+G+L + + W++VY
Sbjct: 536 SQSRQIRSCTKVHMQGSAVGRAIDLTRSECYEDLFKKLEEMFDIKGELLE-STKKWQVVY 594
Query: 472 VDHENDILLVGDDPWEEFVSCVQSIKILSSAEVQQMSLDGDLG 514
D E+D+++VGDDPW EF V+ I I + EV+++S L
Sbjct: 595 TDDEDDMMMVGDDPWNEFCGMVRKIFIYTPEEVKKLSPKNKLA 637
>AT1G59750.1 | Symbols: ARF1 | ARF1 (AUXIN RESPONSE FACTOR 1); DNA
binding / transcription factor | chr1:21980414-21984193
FORWARD
Length = 665
Score = 90.5 bits (223), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 43/103 (41%), Positives = 70/103 (67%), Gaps = 2/103 (1%)
Query: 413 NQTQRMRTYTKVQKRGS-VGRSIDVTRYKGYDELRHDLARMFGIEGQLEDPQSSDWKLVY 471
+Q++++R+ TKV +GS VGR+ID+TR + Y++L L MF I+G+L + + W++VY
Sbjct: 536 SQSRQIRSCTKVHMQGSAVGRAIDLTRSECYEDLFKKLEEMFDIKGELLE-STKKWQVVY 594
Query: 472 VDHENDILLVGDDPWEEFVSCVQSIKILSSAEVQQMSLDGDLG 514
D E+D+++VGDDPW EF V+ I I + EV+++S L
Sbjct: 595 TDDEDDMMMVGDDPWNEFCGMVRKIFIYTPEEVKKLSPKNKLA 637
>AT1G59750.2 | Symbols: ARF1 | ARF1 (AUXIN RESPONSE FACTOR 1); DNA
binding / transcription factor | chr1:21980414-21984193
FORWARD
Length = 662
Score = 90.5 bits (223), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 43/103 (41%), Positives = 70/103 (67%), Gaps = 2/103 (1%)
Query: 413 NQTQRMRTYTKVQKRGS-VGRSIDVTRYKGYDELRHDLARMFGIEGQLEDPQSSDWKLVY 471
+Q++++R+ TKV +GS VGR+ID+TR + Y++L L MF I+G+L + + W++VY
Sbjct: 533 SQSRQIRSCTKVHMQGSAVGRAIDLTRSECYEDLFKKLEEMFDIKGELLE-STKKWQVVY 591
Query: 472 VDHENDILLVGDDPWEEFVSCVQSIKILSSAEVQQMSLDGDLG 514
D E+D+++VGDDPW EF V+ I I + EV+++S L
Sbjct: 592 TDDEDDMMMVGDDPWNEFCGMVRKIFIYTPEEVKKLSPKNKLA 634
>AT4G23980.2 | Symbols: ARF9 | ARF9 (AUXIN RESPONSE FACTOR 9);
transcription factor | chr4:12451592-12454737 FORWARD
Length = 636
Score = 88.2 bits (217), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 42/98 (42%), Positives = 66/98 (67%), Gaps = 3/98 (3%)
Query: 412 ANQTQRMRTYTKVQKRG-SVGRSIDVTRYKGYDELRHDLARMFGIEGQLEDPQSSDWKLV 470
+ Q+ R+ TKVQ +G VGR++D+ KGY+EL D+ ++F I+G+L + W++V
Sbjct: 514 SKQSSSTRSRTKVQMQGVPVGRAVDLNALKGYNELIDDIEKLFDIKGELRS--RNQWEIV 571
Query: 471 YVDHENDILLVGDDPWEEFVSCVQSIKILSSAEVQQMS 508
+ D E D++LVGDDPW EF + V+ I I S EV++M+
Sbjct: 572 FTDDEGDMMLVGDDPWPEFCNMVKRIFIWSKEEVKKMT 609
>AT4G23980.1 | Symbols: ARF9 | ARF9 (AUXIN RESPONSE FACTOR 9);
transcription factor | chr4:12451592-12454737 FORWARD
Length = 638
Score = 88.2 bits (217), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 42/98 (42%), Positives = 66/98 (67%), Gaps = 3/98 (3%)
Query: 412 ANQTQRMRTYTKVQKRG-SVGRSIDVTRYKGYDELRHDLARMFGIEGQLEDPQSSDWKLV 470
+ Q+ R+ TKVQ +G VGR++D+ KGY+EL D+ ++F I+G+L + W++V
Sbjct: 516 SKQSSSTRSRTKVQMQGVPVGRAVDLNALKGYNELIDDIEKLFDIKGELRS--RNQWEIV 573
Query: 471 YVDHENDILLVGDDPWEEFVSCVQSIKILSSAEVQQMS 508
+ D E D++LVGDDPW EF + V+ I I S EV++M+
Sbjct: 574 FTDDEGDMMLVGDDPWPEFCNMVKRIFIWSKEEVKKMT 611
>AT2G46530.2 | Symbols: ARF11 | ARF11 (AUXIN RESPONSE FACTOR 11);
transcription factor | chr2:19105511-19108029 FORWARD
Length = 514
Score = 87.0 bits (214), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 45/102 (44%), Positives = 64/102 (62%), Gaps = 6/102 (5%)
Query: 419 RTYTKVQKRGS-VGRSIDVTRYKGYDELRHDLARMFGIEGQLEDPQSSDWKLVYVDHEND 477
R+ KVQ +G+ VGR++D+T + YDEL +L +MF IEG+L W +V+ D E D
Sbjct: 403 RSRIKVQMQGTAVGRAVDLTLLRSYDELIKELEKMFEIEGELSP--KDKWAIVFTDDEGD 460
Query: 478 ILLVGDDPWEEFVSCVQSIKILSSAEVQQM---SLDGDLGSM 516
+LVGDDPW EF + + I S EV++M SL GD G++
Sbjct: 461 RMLVGDDPWNEFCKMAKKLFIYPSDEVKKMRSKSLLGDKGTI 502
>AT2G46530.1 | Symbols: ARF11 | ARF11 (AUXIN RESPONSE FACTOR 11);
transcription factor | chr2:19104993-19108029 FORWARD
Length = 601
Score = 86.7 bits (213), Expect = 4e-17, Method: Compositional matrix adjust.
Identities = 46/108 (42%), Positives = 65/108 (60%), Gaps = 6/108 (5%)
Query: 413 NQTQRMRTYTKVQKRGS-VGRSIDVTRYKGYDELRHDLARMFGIEGQLEDPQSSDWKLVY 471
Q R+ KVQ +G+ VGR++D+T + YDEL +L +MF IEG+L W +V+
Sbjct: 484 KQQTSTRSRIKVQMQGTAVGRAVDLTLLRSYDELIKELEKMFEIEGELSP--KDKWAIVF 541
Query: 472 VDHENDILLVGDDPWEEFVSCVQSIKILSSAEVQQM---SLDGDLGSM 516
D E D +LVGDDPW EF + + I S EV++M SL GD G++
Sbjct: 542 TDDEGDRMLVGDDPWNEFCKMAKKLFIYPSDEVKKMRSKSLLGDKGTI 589
>AT2G46530.3 | Symbols: ARF11 | ARF11 (AUXIN RESPONSE FACTOR 11);
transcription factor | chr2:19105112-19108029 FORWARD
Length = 622
Score = 86.3 bits (212), Expect = 4e-17, Method: Compositional matrix adjust.
Identities = 46/108 (42%), Positives = 65/108 (60%), Gaps = 6/108 (5%)
Query: 413 NQTQRMRTYTKVQKRGS-VGRSIDVTRYKGYDELRHDLARMFGIEGQLEDPQSSDWKLVY 471
Q R+ KVQ +G+ VGR++D+T + YDEL +L +MF IEG+L W +V+
Sbjct: 505 KQQTSTRSRIKVQMQGTAVGRAVDLTLLRSYDELIKELEKMFEIEGELSP--KDKWAIVF 562
Query: 472 VDHENDILLVGDDPWEEFVSCVQSIKILSSAEVQQM---SLDGDLGSM 516
D E D +LVGDDPW EF + + I S EV++M SL GD G++
Sbjct: 563 TDDEGDRMLVGDDPWNEFCKMAKKLFIYPSDEVKKMRSKSLLGDKGTI 610
>AT3G61830.1 | Symbols: ARF18 | ARF18 (AUXIN RESPONSE FACTOR 18);
transcription factor | chr3:22888171-22891179 FORWARD
Length = 602
Score = 86.3 bits (212), Expect = 5e-17, Method: Compositional matrix adjust.
Identities = 45/104 (43%), Positives = 63/104 (60%), Gaps = 3/104 (2%)
Query: 413 NQTQRMRTYTKVQKRG-SVGRSIDVTRYKGYDELRHDLARMFGIEGQLEDPQSSDWKLVY 471
+ Q R+ TKVQ +G +VGR++D+T K YDEL +L MF I+GQL W +V+
Sbjct: 483 KKQQTSRSRTKVQMQGIAVGRAVDLTLLKSYDELIDELEEMFEIQGQLL--ARDKWIVVF 540
Query: 472 VDHENDILLVGDDPWEEFVSCVQSIKILSSAEVQQMSLDGDLGS 515
D E D++L GDDPW EF + I I SS EV++M+ + S
Sbjct: 541 TDDEGDMMLAGDDPWNEFCKMAKKIFIYSSDEVKKMTTKLKISS 584
>AT1G35540.1 | Symbols: ARF14 | ARF14 (AUXIN RESPONSE FACTOR 14);
transcription factor | chr1:13108634-13111700 FORWARD
Length = 605
Score = 79.3 bits (194), Expect = 5e-15, Method: Compositional matrix adjust.
Identities = 39/105 (37%), Positives = 66/105 (62%), Gaps = 3/105 (2%)
Query: 412 ANQTQRMRTYTKVQKRG-SVGRSIDVTRYKGYDELRHDLARMFGIEGQLEDPQSSDWKLV 470
+ Q RT TKVQ +G ++GR++D++ GYD+L +L ++F ++GQL+ + W++
Sbjct: 503 SKQFSSTRTCTKVQMQGVTIGRAVDLSVLNGYDQLILELEKLFDLKGQLQ--ARNQWEIA 560
Query: 471 YVDHENDILLVGDDPWEEFVSCVQSIKILSSAEVQQMSLDGDLGS 515
+ ++E D +LVG+DPW EF + V+ I I S EV+ + L S
Sbjct: 561 FTNNEEDKMLVGEDPWPEFCNMVKKIFIYSKEEVKNLKSRKSLSS 605
>AT1G34410.1 | Symbols: ARF21 | ARF21 (AUXIN RESPONSE FACTOR 21);
transcription factor | chr1:12577722-12580824 FORWARD
Length = 606
Score = 78.2 bits (191), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 38/88 (43%), Positives = 58/88 (65%), Gaps = 3/88 (3%)
Query: 419 RTYTKVQKRG-SVGRSIDVTRYKGYDELRHDLARMFGIEGQLEDPQSSDWKLVYVDHEND 477
RT TKVQ +G ++GR++D++ GYD+L +L ++F I+GQL+ + WK+ + D +
Sbjct: 511 RTCTKVQMQGVTIGRAVDLSVLNGYDQLILELEKLFDIKGQLQT--RNQWKIAFTDSDGY 568
Query: 478 ILLVGDDPWEEFVSCVQSIKILSSAEVQ 505
+LVGDDPW EF V+ I I S EV+
Sbjct: 569 EMLVGDDPWPEFCKMVKKILIYSKEEVK 596
>AT1G35240.1 | Symbols: ARF20 | ARF20 (AUXIN RESPONSE FACTOR 20);
transcription factor | chr1:12927457-12930523 REVERSE
Length = 590
Score = 77.0 bits (188), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 37/88 (42%), Positives = 58/88 (65%), Gaps = 3/88 (3%)
Query: 419 RTYTKVQKRG-SVGRSIDVTRYKGYDELRHDLARMFGIEGQLEDPQSSDWKLVYVDHEND 477
RT TKVQ +G ++GR++D++ GYD+L +L ++F ++GQL+ + WK+ + D +
Sbjct: 495 RTCTKVQMQGVTIGRAVDLSVLNGYDQLILELEKLFDLKGQLQT--RNQWKIAFTDSDGY 552
Query: 478 ILLVGDDPWEEFVSCVQSIKILSSAEVQ 505
+LVGDDPW EF V+ I I S EV+
Sbjct: 553 EMLVGDDPWPEFCKMVKKILIYSKEEVK 580
>AT1G34310.1 | Symbols: ARF12 | ARF12 (AUXIN RESPONSE FACTOR 12);
transcription factor | chr1:12508548-12511520 REVERSE
Length = 593
Score = 75.5 bits (184), Expect = 8e-14, Method: Compositional matrix adjust.
Identities = 35/81 (43%), Positives = 56/81 (69%), Gaps = 3/81 (3%)
Query: 419 RTYTKVQKRG-SVGRSIDVTRYKGYDELRHDLARMFGIEGQLEDPQSSDWKLVYVDHEND 477
RT TKVQ +G ++GR++D++ GYD+L +L ++F I+GQL+ + W++ + D + D
Sbjct: 511 RTCTKVQMQGVTIGRAVDLSVLNGYDQLILELEKLFDIKGQLQT--RNQWEIAFTDSDED 568
Query: 478 ILLVGDDPWEEFVSCVQSIKI 498
+LVGDDPW EF + V+ I I
Sbjct: 569 KMLVGDDPWPEFCNMVKKIFI 589
>AT1G35520.1 | Symbols: ARF15 | ARF15 (AUXIN RESPONSE FACTOR 15);
transcription factor | chr1:13082819-13085830 REVERSE
Length = 598
Score = 74.7 bits (182), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 35/88 (39%), Positives = 58/88 (65%), Gaps = 3/88 (3%)
Query: 412 ANQTQRMRTYTKVQKRG-SVGRSIDVTRYKGYDELRHDLARMFGIEGQLEDPQSSDWKLV 470
+ Q RT TKVQ +G ++GR++D++ GYD+L +L ++F ++GQL+ + WK++
Sbjct: 509 SKQFSSTRTCTKVQMQGVTIGRAVDLSVLNGYDQLILELEKLFDLKGQLQT--RNQWKII 566
Query: 471 YVDHENDILLVGDDPWEEFVSCVQSIKI 498
+ + D +LVGDDPW EF + V+ I I
Sbjct: 567 FTGSDEDEMLVGDDPWPEFCNMVKRIYI 594
>AT1G34390.1 | Symbols: ARF22 | ARF22 (AUXIN RESPONSE FACTOR 22);
transcription factor | chr1:12556005-12559082 FORWARD
Length = 598
Score = 71.6 bits (174), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 34/89 (38%), Positives = 57/89 (64%), Gaps = 3/89 (3%)
Query: 412 ANQTQRMRTYTKVQKRG-SVGRSIDVTRYKGYDELRHDLARMFGIEGQLEDPQSSDWKLV 470
+ Q RT TKVQ +G ++ R++D++ GYD+L +L +F ++GQL+ + W++
Sbjct: 502 SKQFSSTRTCTKVQMQGVTIERAVDLSVLNGYDQLILELEELFDLKGQLQT--RNQWEIA 559
Query: 471 YVDHENDILLVGDDPWEEFVSCVQSIKIL 499
+ D ++D +LVGDDPW EF + V+ I I
Sbjct: 560 FTDSDDDKMLVGDDPWPEFCNMVKKILIF 588
>AT1G34170.3 | Symbols: | transcription factor |
chr1:12443578-12446764 REVERSE
Length = 546
Score = 66.6 bits (161), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 31/89 (34%), Positives = 55/89 (61%), Gaps = 3/89 (3%)
Query: 422 TKVQKRG-SVGRSIDVTRYKGYDELRHDLARMFGIEGQLEDPQSSDWKLVYVDHENDILL 480
TKV +G ++ R++D+T GY++L L +F ++ +L + W++V+ ++E +L
Sbjct: 436 TKVHMQGVAISRAVDLTAMHGYNQLIQKLEELFDLKDELR--TRNQWEIVFTNNEGAEML 493
Query: 481 VGDDPWEEFVSCVQSIKILSSAEVQQMSL 509
VGDDPW EF + + I I S E+++M L
Sbjct: 494 VGDDPWPEFCNMAKRIFICSKEEIKKMKL 522
>AT5G43700.1 | Symbols: ATAUX2-11, IAA4 | ATAUX2-11 (AUXIN INDUCIBLE
2-11); DNA binding / transcription factor |
chr5:17550465-17551206 FORWARD
Length = 186
Score = 60.8 bits (146), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 37/96 (38%), Positives = 51/96 (53%), Gaps = 5/96 (5%)
Query: 421 YTKVQKRGS-VGRSIDVTRYKGYDELRHDLARMF----GIEGQLEDPQSSDWKLVYVDHE 475
Y KV G+ R ID+T YK Y EL L MF G + E + SD+ Y D +
Sbjct: 90 YVKVSMDGAPYLRKIDLTMYKQYPELMKSLENMFKFSVGEYFEREGYKGSDFVPTYEDKD 149
Query: 476 NDILLVGDDPWEEFVSCVQSIKILSSAEVQQMSLDG 511
D +LVGD PWE FVS + ++I+ +EV+ + G
Sbjct: 150 GDWMLVGDVPWEMFVSSCKRLRIMKGSEVKGLGCGG 185
>AT5G25890.1 | Symbols: IAA28, IAR2 | IAA28 (INDOLE-3-ACETIC ACID
INDUCIBLE 28); transcription factor |
chr5:9033480-9034554 FORWARD
Length = 175
Score = 57.0 bits (136), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 29/89 (32%), Positives = 50/89 (56%), Gaps = 3/89 (3%)
Query: 421 YTKVQKRGS-VGRSIDVTRYKGYDELRHDLARMFGIEGQLEDPQSSDWKLVYVDHENDIL 479
Y K+ G +GR ++++ Y Y +L H + ++F + + + + LVY D E D +
Sbjct: 82 YVKINMEGVPIGRKVNLSAYNNYQQLSHAVDQLFSKKDSWD--LNRQYTLVYEDTEGDKV 139
Query: 480 LVGDDPWEEFVSCVQSIKILSSAEVQQMS 508
LVGD PWE FVS V+ + +L ++ +S
Sbjct: 140 LVGDVPWEMFVSTVKRLHVLKTSHAFSLS 168
>AT2G33310.3 | Symbols: IAA13 | IAA13; transcription factor |
chr2:14114569-14115757 REVERSE
Length = 246
Score = 55.5 bits (132), Expect = 8e-08, Method: Compositional matrix adjust.
Identities = 30/97 (30%), Positives = 50/97 (51%), Gaps = 14/97 (14%)
Query: 421 YTKVQKRG-SVGRSIDVTRYKGYDELRHDLARMF--------GIEGQLEDPQ-----SSD 466
+ KV G ++GR +D+ + Y+ L L MF G+ Q P SS+
Sbjct: 130 FIKVNMDGVAIGRKVDLNAHSSYENLAQTLEDMFFRTNPGTVGLTSQFTKPLRLLDGSSE 189
Query: 467 WKLVYVDHENDILLVGDDPWEEFVSCVQSIKILSSAE 503
+ L Y D E D +LVGD PW F++ V+ ++++ ++E
Sbjct: 190 FVLTYEDKEGDWMLVGDVPWRMFINSVKRLRVMKTSE 226
>AT2G33310.1 | Symbols: IAA13 | IAA13; transcription factor |
chr2:14114569-14115757 REVERSE
Length = 246
Score = 55.5 bits (132), Expect = 8e-08, Method: Compositional matrix adjust.
Identities = 30/97 (30%), Positives = 50/97 (51%), Gaps = 14/97 (14%)
Query: 421 YTKVQKRG-SVGRSIDVTRYKGYDELRHDLARMF--------GIEGQLEDPQ-----SSD 466
+ KV G ++GR +D+ + Y+ L L MF G+ Q P SS+
Sbjct: 130 FIKVNMDGVAIGRKVDLNAHSSYENLAQTLEDMFFRTNPGTVGLTSQFTKPLRLLDGSSE 189
Query: 467 WKLVYVDHENDILLVGDDPWEEFVSCVQSIKILSSAE 503
+ L Y D E D +LVGD PW F++ V+ ++++ ++E
Sbjct: 190 FVLTYEDKEGDWMLVGDVPWRMFINSVKRLRVMKTSE 226
>AT2G33310.2 | Symbols: IAA13 | IAA13; transcription factor |
chr2:14114569-14115757 REVERSE
Length = 247
Score = 55.5 bits (132), Expect = 8e-08, Method: Compositional matrix adjust.
Identities = 30/97 (30%), Positives = 50/97 (51%), Gaps = 14/97 (14%)
Query: 421 YTKVQKRG-SVGRSIDVTRYKGYDELRHDLARMF--------GIEGQLEDPQ-----SSD 466
+ KV G ++GR +D+ + Y+ L L MF G+ Q P SS+
Sbjct: 131 FIKVNMDGVAIGRKVDLNAHSSYENLAQTLEDMFFRTNPGTVGLTSQFTKPLRLLDGSSE 190
Query: 467 WKLVYVDHENDILLVGDDPWEEFVSCVQSIKILSSAE 503
+ L Y D E D +LVGD PW F++ V+ ++++ ++E
Sbjct: 191 FVLTYEDKEGDWMLVGDVPWRMFINSVKRLRVMKTSE 227
>AT1G04550.2 | Symbols: IAA12, BDL | IAA12 (AUXIN-INDUCED PROTEIN
12); transcription factor/ transcription repressor |
chr1:1240582-1241810 FORWARD
Length = 239
Score = 54.7 bits (130), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 33/95 (34%), Positives = 51/95 (53%), Gaps = 13/95 (13%)
Query: 421 YTKVQKRG-SVGRSIDVTRYKGYDELRHDLARMF-GIEG----------QLEDPQSSDWK 468
+ KV G +GR +D+ + Y+ L L MF G+ G +L D SSD+
Sbjct: 126 FVKVNMDGVGIGRKVDMRAHSSYENLAQTLEEMFFGMTGTTCREKVKPLRLLD-GSSDFV 184
Query: 469 LVYVDHENDILLVGDDPWEEFVSCVQSIKILSSAE 503
L Y D E D +LVGD PW F++ V+ ++I+ ++E
Sbjct: 185 LTYEDKEGDWMLVGDVPWRMFINSVKRLRIMGTSE 219
>AT3G16500.1 | Symbols: PAP1, IAA26 | PAP1 (PHYTOCHROME-ASSOCIATED
PROTEIN 1); transcription factor | chr3:5612801-5614208
REVERSE
Length = 269
Score = 54.7 bits (130), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 31/108 (28%), Positives = 59/108 (54%), Gaps = 17/108 (15%)
Query: 414 QTQRMRTYTKVQKRG-SVGRSIDVTRYKGYDELRHDLARMF-GI--------EGQLEDP- 462
+T++ + K+ G +GR +D+ Y Y++L + ++F G+ +GQ E+
Sbjct: 146 ETKKEGMFVKINMDGVPIGRKVDLNAYNSYEQLSFVVDKLFRGLLAAQRDISDGQGEEKP 205
Query: 463 ------QSSDWKLVYVDHENDILLVGDDPWEEFVSCVQSIKILSSAEV 504
++ L Y D+E D +LVGD PW+ FVS V+ ++++ S+E+
Sbjct: 206 IIGLLDGKGEFTLTYEDNEGDKMLVGDVPWQMFVSSVKRLRVIKSSEI 253
>AT4G29080.1 | Symbols: PAP2, IAA27 | PAP2 (PHYTOCHROME-ASSOCIATED
PROTEIN 2); transcription factor |
chr4:14323665-14325213 REVERSE
Length = 305
Score = 54.3 bits (129), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 33/104 (31%), Positives = 50/104 (48%), Gaps = 20/104 (19%)
Query: 421 YTKVQKRGS-VGRSIDVTRYKGYDELRHDLARMFGI------------------EGQLED 461
Y KV G+ R ID+ YK Y EL L +MF E +L D
Sbjct: 187 YVKVSMEGAPYLRKIDLKTYKSYLELSSALEKMFSCFTIGQFGSHGGCGRDGLNESRLTD 246
Query: 462 P-QSSDWKLVYVDHENDILLVGDDPWEEFVSCVQSIKILSSAEV 504
+ S++ + Y D ++D +LVGD PWE F+ + ++I+ S+E
Sbjct: 247 LLRGSEYVVTYEDKDSDWMLVGDVPWEMFICSCKKLRIMKSSEA 290
>AT4G28640.1 | Symbols: IAA11 | IAA11 (INDOLE-3-ACETIC ACID
INDUCIBLE 11); transcription factor |
chr4:14142288-14143755 FORWARD
Length = 246
Score = 54.3 bits (129), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 45/157 (28%), Positives = 66/157 (42%), Gaps = 27/157 (17%)
Query: 374 STAAISSQSFGVP----------IMPFKPGCSNDVAINDSGVLNGGLWANQTQRMRTYTK 423
S AA S Q G P + K + D + S +N + R + K
Sbjct: 81 SMAATSGQVVGWPPIRTYRMNSMVNQAKASATEDPNLEISQAVNKNRSDSTKMRNSMFVK 140
Query: 424 VQKRG-SVGRSIDVTRYKGYDELRHDLARMF----------GIEGQLEDPQ------SSD 466
V G +GR ID+ +K Y+ L + L MF +G +E P SS
Sbjct: 141 VTMDGIPIGRKIDLNAHKCYESLSNTLEEMFLKPKLGSRTLETDGHMETPVKILPDGSSG 200
Query: 467 WKLVYVDHENDILLVGDDPWEEFVSCVQSIKILSSAE 503
L Y D E D +LVGD PW F+ V+ ++I+ ++E
Sbjct: 201 LVLTYEDKEGDWMLVGDVPWGMFIGSVRRLRIMKTSE 237
>AT1G04240.1 | Symbols: SHY2, IAA3 | SHY2 (SHORT HYPOCOTYL 2);
transcription factor | chr1:1128564-1129319 REVERSE
Length = 189
Score = 54.3 bits (129), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 31/92 (33%), Positives = 49/92 (53%), Gaps = 5/92 (5%)
Query: 421 YTKVQKRGS-VGRSIDVTRYKGYDELRHDLARMF----GIEGQLEDPQSSDWKLVYVDHE 475
Y KV G+ R ID++ YKGY EL L MF G + + + SD+ Y D +
Sbjct: 94 YVKVSMDGAPYLRKIDLSCYKGYSELLKALEVMFKFSVGEYFERDGYKGSDFVPTYEDKD 153
Query: 476 NDILLVGDDPWEEFVSCVQSIKILSSAEVQQM 507
D +L+GD PWE F+ + ++I+ +E + +
Sbjct: 154 GDWMLIGDVPWEMFICTCKRLRIMKGSEAKGL 185
>AT4G28640.2 | Symbols: IAA11 | IAA11 (INDOLE-3-ACETIC ACID
INDUCIBLE 11); transcription factor |
chr4:14142288-14143928 FORWARD
Length = 302
Score = 53.1 bits (126), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 35/106 (33%), Positives = 52/106 (49%), Gaps = 19/106 (17%)
Query: 417 RMR--TYTKVQKRG-SVGRSIDVTRYKGYDELRHDLARMF----------GIEGQLEDPQ 463
+MR + KV G +GR ID+ +K Y+ L + L MF +G +E P
Sbjct: 132 KMRNSMFVKVTMDGIPIGRKIDLNAHKCYESLSNTLEEMFLKPKLGSRTLETDGHMETPV 191
Query: 464 ------SSDWKLVYVDHENDILLVGDDPWEEFVSCVQSIKILSSAE 503
SS L Y D E D +LVGD PW F+ V+ ++I+ ++E
Sbjct: 192 KILPDGSSGLVLTYEDKEGDWMLVGDVPWGMFIGSVRRLRIMKTSE 237
>AT1G51950.1 | Symbols: IAA18 | IAA18 (INDOLE-3-ACETIC ACID
INDUCIBLE 18); transcription factor |
chr1:19305670-19307130 FORWARD
Length = 267
Score = 52.4 bits (124), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 25/91 (27%), Positives = 50/91 (54%), Gaps = 16/91 (17%)
Query: 430 VGRSIDVTRYKGYDELRHDLARMFG--IEGQLEDPQS--------------SDWKLVYVD 473
+GR +D++ + Y++L + ++F + Q + P S ++ L Y D
Sbjct: 161 IGRKVDLSAHNSYEQLSFTVDKLFRGLLAAQRDFPSSIEDEKPITGLLDGNGEYTLTYED 220
Query: 474 HENDILLVGDDPWEEFVSCVQSIKILSSAEV 504
+E D +LVGD PW+ FVS V+ ++++ ++E+
Sbjct: 221 NEGDKMLVGDVPWQMFVSSVKRLRVIKTSEI 251
>AT3G62100.1 | Symbols: IAA30 | IAA30 (INDOLE-3-ACETIC ACID
INDUCIBLE 30); transcription factor |
chr3:22995835-22996593 FORWARD
Length = 172
Score = 52.0 bits (123), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 33/83 (39%), Positives = 43/83 (51%), Gaps = 5/83 (6%)
Query: 421 YTKVQKRGS-VGRSIDVTRYKGYDELRHDLARMFG---IEGQLEDPQSSDWK-LVYVDHE 475
Y KV G +GR ID+ GY +L L MF + + ED S L Y D E
Sbjct: 84 YVKVNMEGVPIGRKIDLLSLNGYHDLITTLDYMFNASILWAEEEDMCSEKSHVLTYADKE 143
Query: 476 NDILLVGDDPWEEFVSCVQSIKI 498
D ++VGD PWE F+S V+ +KI
Sbjct: 144 GDWMMVGDVPWEMFLSSVRRLKI 166
>AT3G15540.1 | Symbols: IAA19, MSG2 | IAA19 (INDOLE-3-ACETIC ACID
INDUCIBLE 19); transcription factor |
chr3:5264100-5265378 FORWARD
Length = 197
Score = 50.8 bits (120), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 29/102 (28%), Positives = 51/102 (50%), Gaps = 4/102 (3%)
Query: 412 ANQTQRMRTYTKVQKRGS-VGRSIDVTRYKGYDELRHDLARMFGIEG---QLEDPQSSDW 467
A+ T+ Y KV G R +D+ +GYD+L L ++FG G L+D + ++
Sbjct: 89 ASTTKVGLGYVKVSMDGVPYLRKMDLGSSQGYDDLAFALDKLFGFRGIGVALKDGDNCEY 148
Query: 468 KLVYVDHENDILLVGDDPWEEFVSCVQSIKILSSAEVQQMSL 509
+Y D + D +L GD PW F+ + ++I+ ++ L
Sbjct: 149 VTIYEDKDGDWMLAGDVPWGMFLESCKRLRIMKRSDATGFGL 190
>AT2G46990.1 | Symbols: IAA20 | IAA20 (INDOLE-3-ACETIC ACID
INDUCIBLE 20); transcription factor |
chr2:19307861-19308869 FORWARD
Length = 175
Score = 49.7 bits (117), Expect = 5e-06, Method: Composition-based stats.
Identities = 32/83 (38%), Positives = 42/83 (50%), Gaps = 5/83 (6%)
Query: 421 YTKVQKRG-SVGRSIDVTRYKGYDELRHDLARMFG---IEGQLEDP-QSSDWKLVYVDHE 475
Y KV G +GR ID+ GY +L L MF + + ED L Y D E
Sbjct: 86 YVKVNMEGVPIGRKIDLMSLNGYRDLIRTLDFMFNASILWAEEEDMCNEKSHVLTYADKE 145
Query: 476 NDILLVGDDPWEEFVSCVQSIKI 498
D ++VGD PWE F+S V+ +KI
Sbjct: 146 GDWMMVGDVPWEMFLSTVRRLKI 168