Jatropha Genome Database

JcCB0152261.10
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCB0152261.10 - phase: 0 /partial
         (174 letters)

Database: TAIR9_pep 
           33,410 sequences; 13,434,913 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT3G26730.1 | Symbols:  | zinc finger (C3HC4-type RING finger) f...    99   1e-21

>AT3G26730.1 | Symbols:  | zinc finger (C3HC4-type RING finger)
           family protein | chr3:9823770-9827270 FORWARD
          Length = 772

 Score = 99.0 bits (245), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 63/140 (45%), Positives = 81/140 (57%), Gaps = 10/140 (7%)

Query: 36  PGLSSIGRSFC-DDSPKFSMDDFEALGXXXXXXXXXXXXXXXXVVGERLLFSNVTRLGFA 94
           P ++S G+S   DD P FS+DDFEALG                 +GER  FS+VTRLGFA
Sbjct: 642 PLMASFGQSSSSDDFPPFSLDDFEALGNSAPISSSPPN------IGERSSFSHVTRLGFA 695

Query: 95  AGHGSPALRTEETSALHNNKVTNDSSSVSGTKNSGTPSFANVISRVKSGEALDAPKTNEI 154
           AGH SP L  E T+   ++  +  S++ +G +N+   SFA+V SR  +     AP   E 
Sbjct: 696 AGHDSPNLNNEPTNVQSSSSSSEVSNATTGARNTNITSFASVASRTTTPM---APTVKEP 752

Query: 155 GKKGKKSSRVLLSTAGGRRY 174
           GK+GKK SRVLLST   RRY
Sbjct: 753 GKRGKKQSRVLLSTTSVRRY 772